STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46232.1Hypothetical Protein; Ab initio prediction:Prodigal:2.60; SUPERFAMILY:SSF47240:Ferritin-like superfamily. (81 aa)    
Predicted Functional Partners:
AHY46233.1
COG:COG1755: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF04140:Isoprenylcysteine carboxyl methyltransferase; Pfam:PF04140:Isoprenylcysteine carboxyl methyltransferase.
       0.424
AHY46234.1
COG:COG3424: Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF00195:Chalcone/stilbene synthase, N-terminal; Pfam:PF00195:Chalcone/stilbene synthase, N-terminal; PIRSF:PIRSF000451:Polyketide synthase, type III; ProSitePatterns:PS00441:Chalcone/stilbene synthase, active site; SUPERFAMILY:SSF53901:Thiolase-like.
       0.424
AHY46235.1
COG:COG0778: Nitroreductase [Energy production and conversion]; Pfam:PF00881:Nitroreductase-like; SUPERFAMILY:SSF55469:Nitroreductase-like.
       0.424
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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