STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46280.1Hypothetical Protein; Ab initio prediction:Prodigal:2.60. (87 aa)    
Predicted Functional Partners:
AHY46279.1
COG:COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Pfam:PF00072:Signal transduction response regulator, receiver domain; Pfam:PF00072:Signal transduction response regulator, receiver domain; PRINTS:PR00038:Transcription regulator LuxR, C-terminal; ProSitePatterns:PS00622:Transcription regulator LuxR, C-terminal; ProSiteProfiles:PS50043:Transcription regulator LuxR, C-terminal; SMART:SM00448:Signal transduction response regulator, receiver domain; SUPERFAMILY:SSF52172:CheY-like superfamily.
       0.773
AHY46281.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60; ProSiteProfiles:PS51257:Prokaryotic membrane lipoprotein lipid attachment site profile; SUPERFAMILY:SSF89392:No Description.
       0.414
AHY46277.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.402
AHY46278.1
COG:COG2256: ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication recombination and repair]; Pfam:PF12002:MgsA AAA+ ATPase C-terminal; Pfam:PF12002:MgsA AAA+ ATPase C-terminal; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF48019:DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal.
       0.402
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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