STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46298.1Major Facilitator Superfamily; COG:COG2814: Arabinose efflux permease [Carbohydrate transport and metabolism]; Pfam:PF07690:Major facilitator superfamily; PRINTS:PR01036:Tetracycline resistance protein TetB/drug resistance transporter; ProSiteProfiles:PS50850:Major facilitator superfamily domain; SUPERFAMILY:SSF103473:Major facilitator superfamily domain, general substrate transporter. (479 aa)    
Predicted Functional Partners:
AHY46297.1
PPOX class probable F420-dependent enzyme; TIGRFAM:TIGR03618:F420-binding domain, putative; Pfam:PF01243:Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; SUPERFAMILY:SSF50475:FMN-binding split barrel.
       0.678
AHY46295.1
Transposase; COG:COG3293: Transposase and inactivated derivatives [DNA replication recombination and repair]; Pfam:PF13586:Transposase DDE domain; Pfam:PF13586:Transposase DDE domain; SUPERFAMILY:SSF53098:Ribonuclease H-like domain.
       0.518
AHY46296.1
Putative transposase of IS4/5 family (DUF4096); COG:COG3293: Transposase and inactivated derivatives [DNA replication recombination and repair]; Pfam:PF13340:Putative transposase IS4/IS5 family.
       0.518
AHY46294.1
COG:COG3592: Uncharacterized conserved protein [Function unknown]; Pfam:PF06902:Ferredoxin soy-like; SMART:SM00704:Iron sulphur-containing domain, CDGSH-type, subfamily; SUPERFAMILY:SSF54862:No Description.
 
     0.486
AHY46050.1
COG:COG4166: ABC-type oligopeptide transport system periplasmic component [Amino acid transport and metabolism]; Pfam:PF00496:Bacterial extracellular solute-binding protein, family 5; Pfam:PF00496:Bacterial extracellular solute-binding protein, family 5; PIRSF:PIRSF002741:No Description; SUPERFAMILY:SSF53850:No Description.
   
    0.483
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.