STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46303.1TIGRFAM:TIGR01098:Phosphonate-binding periplasmic protein; COG:COG3221: ABC-type phosphate/phosphonate transport system periplasmic component [Inorganic ion transport and metabolism]; Pfam:PF12974:ABC transporter, phosphonate, periplasmic substrate-binding protein; ProSiteProfiles:PS51257:Prokaryotic membrane lipoprotein lipid attachment site profile.; SMART:SM00062:Extracellular solute-binding protein, family 3; SUPERFAMILY:SSF53850:No Description. (303 aa)    
Predicted Functional Partners:
AHY46302.1
COG:COG3638: ABC-type phosphate/phosphonate transport system ATPase component [Inorganic ion transport and metabolism]; Pfam:PF00005:ABC transporter-like; Pfam:PF00005:ABC transporter-like; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS50893:ABC transporter-like; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
 
 
 0.997
AHY46301.1
PhnE: phosphonate ABC transporter, permease protein PhnE; TIGRFAM:TIGR01097:Phosphonate uptake transporter; COG:COG3639: ABC-type phosphate/phosphonate transport system permease component [Inorganic ion transport and metabolism]; Pfam:PF00528:Binding-protein-dependent transport systems inner membrane component; ProSiteProfiles:PS50928:Binding-protein-dependent transport systems inner membrane component; SUPERFAMILY:SSF161098:No Description.
 
 0.996
AHY46304.1
COG:COG0583: Transcriptional regulator [Transcription]; Pfam:PF03466:LysR, substrate-binding; Pfam:PF03466:LysR, substrate-binding; PRINTS:PR00039:Transcription regulator HTH, LysR; ProSiteProfiles:PS50931:Transcription regulator HTH, LysR; SUPERFAMILY:SSF53850:No Description; Belongs to the LysR transcriptional regulatory family.
     
 0.668
AHY45984.1
Phosphate ABC transporter, phosphate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.
  
 
 0.564
AHY46305.1
COG:COG1954: Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]; Pfam:PF04309:Glycerol-3-phosphate responsive antiterminator; Pfam:PF04309:Glycerol-3-phosphate responsive antiterminator; PIRSF:PIRSF016897:Glycerol-3-phosphate responsive antiterminator; SUPERFAMILY:SSF110391:Glycerol-3-phosphate responsive antiterminator.
       0.476
AHY47331.1
Polysulfide reductase, NrfD; COG:COG0437: Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]; Pfam:PF03916:NrfD family; ProSitePatterns:PS00198:4Fe-4S ferredoxin, iron-sulphur binding, conserved site; ProSiteProfiles:PS51379:4Fe-4S ferredoxin-type, iron-sulpur binding domain; SUPERFAMILY:SSF54862:No Description.
     
 0.472
AHY45463.1
COG:COG1682: ABC-type polysaccharide/polyol phosphate export systems permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis outer membrane]; Pfam:PF01061:ABC-2 type transporter; Pfam:PF01061:ABC-2 type transporter; PIRSF:PIRSF006648:No Description; ProSiteProfiles:PS51012:ABC-2.
  
  
  0.447
AHY47928.1
TIGRFAM:TIGR02454:ABC transporter CbiQ family; COG:COG0619: ABC-type cobalt transport system permease component CbiQ and related transporters [Inorganic ion transport and metabolism]; Pfam:PF02361:ABC/ECF transporter, transmembrane component; CbiQ_TIGR.
     
 0.404
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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