STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46327.1COG:COG0385: Predicted Na+-dependent transporter [General function prediction only]; Pfam:PF01758:Bile acid:sodium symporter; Pfam:PF01758:Bile acid:sodium symporter. (317 aa)    
Predicted Functional Partners:
serS
serS: serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
       0.773
AHY46325.1
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.773
vapC
PIN domain; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
       0.773
AHY46323.1
COG:COG0304: 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF00109:Beta-ketoacyl synthase, N-terminal; Pfam:PF00109:Beta-ketoacyl synthase, N-terminal; SMART:SM00825:Polyketide synthase, beta-ketoacyl synthase domain; SUPERFAMILY:SSF53901:Thiolase-like; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
       0.543
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
 
 
    0.501
proS
proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).
       0.435
AHY46321.1
COG:COG2839: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF04306:Protein of unknown function DUF456; Pfam:PF04306:Protein of unknown function DUF456.
       0.423
AHY46322.1
TIGRFAM:TIGR00268:Conserved hypothetical protein CHP00268; COG:COG1606: ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]; Pfam:PF00733:Asparagine synthase; PIRSF:PIRSF006661:Conserved hypothetical protein CHP00268; SUPERFAMILY:SSF52402:No Description.
       0.423
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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