STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46337.1Hypothetical Protein; Ab initio prediction:Prodigal:2.60. (93 aa)    
Predicted Functional Partners:
AHY46336.1
TIGRFAM:TIGR02605:Regulatory protein, FmdB, putative; COG:COG2331: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF09723:Regulatory protein, FmdB, putative; SMART:SM00834:Regulatory protein, FmdB, putative; CxxC_CxxC_SSSS.
       0.773
AHY46335.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.512
AHY46338.1
TIGRFAM:TIGR00594:DNA polymerase III, alpha subunit; COG:COG0587: DNA polymerase III alpha subunit [DNA replication recombination and repair]; Pfam:PF07733:Bacterial DNA polymerase III, alpha subunit; SMART:SM00481:Polymerase/histidinol phosphatase, N-terminal; SUPERFAMILY:SSF89550:Polymerase/histidinol phosphatase-like;KEGG: 00230; KEGG: 00240.
       0.472
AHY46333.1
COG:COG0136: Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]; Pfam:PF02774:Semialdehyde dehydrogenase, dimerisation domain; Pfam:PF02774:Semialdehyde dehydrogenase, dimerisation domain; PIRSF:PIRSF000148:Aspartate-semialdehyde dehydrogenase; SMART:SM00859:Semialdehyde dehydrogenase, NAD-binding; SUPERFAMILY:SSF55347:No Description; Belongs to the aspartate-semialdehyde dehydrogenase family.
       0.435
AHY46334.1
Acetyltransferase (GNAT) family; COG:COG1247: Sortase and related acyltransferases [Cell envelope biogenesis outer membrane]; Pfam:PF00583:GNAT domain; ProSiteProfiles:PS51186:GNAT domain; SUPERFAMILY:SSF55729:Acyl-CoA N-acyltransferase.
       0.435
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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