STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46339.1Hypothetical protein; COG:COG1306: Uncharacterized conserved protein [Function unknown]; Pfam:PF13200:Putative glycosyl hydrolase domain DUF4015; Pfam:PF13200:Putative glycosyl hydrolase domain DUF4015; SUPERFAMILY:SSF51445:Glycoside hydrolase, superfamily. (401 aa)    
Predicted Functional Partners:
AHY46340.1
COG:COG0726: Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]; Pfam:PF01522:Polysaccharide deacetylase; ProSiteProfiles:PS51257:Prokaryotic membrane lipoprotein lipid attachment site profile.; SUPERFAMILY:SSF88713:Glycoside hydrolase/deacetylase, beta/alpha-barrel.
     0.960
AHY46341.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.550
AHY46338.1
TIGRFAM:TIGR00594:DNA polymerase III, alpha subunit; COG:COG0587: DNA polymerase III alpha subunit [DNA replication recombination and repair]; Pfam:PF07733:Bacterial DNA polymerase III, alpha subunit; SMART:SM00481:Polymerase/histidinol phosphatase, N-terminal; SUPERFAMILY:SSF89550:Polymerase/histidinol phosphatase-like;KEGG: 00230; KEGG: 00240.
       0.480
AHY46342.1
COG:COG0861: Membrane protein TerC possibly involved in tellurium resistance [Inorganic ion transport and metabolism]; Pfam:PF03741:Integral membrane protein TerC; Pfam:PF03741:Integral membrane protein TerC.
       0.409
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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