STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46424.1COG:COG2166: SufE protein probably involved in Fe-S center assembly [General function prediction only]; Pfam:PF02657:Fe-S metabolism associated domain, SufE-like; Pfam:PF02657:Fe-S metabolism associated domain, SufE-like; SUPERFAMILY:SSF82649:No Description. (147 aa)    
Predicted Functional Partners:
AHY46168.1
COG:COG2897: Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]; Pfam:PF00581:Rhodanese-like domain; Pfam:PF00581:Rhodanese-like domain; ProSitePatterns:PS00683:Thiosulphate sulfurtransferase, conserved site; ProSiteProfiles:PS50206:Rhodanese-like domain; SMART:SM00450:Rhodanese-like domain; SUPERFAMILY:SSF52821:Rhodanese-like domain.
 
     0.735
AHY45786.1
COG:COG0520: Selenocysteine lyase [Amino acid transport and metabolism]; Pfam:PF00266:Aminotransferase, class V/Cysteine desulfurase; Pfam:PF00266:Aminotransferase, class V/Cysteine desulfurase; SUPERFAMILY:SSF53383:Pyridoxal phosphate-dependent transferase.
  
 
 0.707
AHY47291.1
COG:COG0520: Selenocysteine lyase [Amino acid transport and metabolism]; Pfam:PF00266:Aminotransferase, class V/Cysteine desulfurase; Pfam:PF00266:Aminotransferase, class V/Cysteine desulfurase; SUPERFAMILY:SSF53383:Pyridoxal phosphate-dependent transferase.
  
 
 0.707
AHY46423.1
COG:COG0523: Putative GTPases (G3E family) [General function prediction only]; Pfam:PF02492:CobW/HypB/UreG domain; Pfam:PF02492:CobW/HypB/UreG domain; SMART:SM00833:Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
       0.532
AHY48005.1
TIGRFAM:TIGR01978:FeS cluster assembly SUF system, ATPase SufC; COG:COG0396: ABC-type transport system involved in Fe-S cluster assembly ATPase component [Posttranslational modification protein turnover chaperones]; Pfam:PF00005:ABC transporter-like; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS50893:ABC transporter-like; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
  
 
 0.523
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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