STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmGTIGRFAM:TIGR01023:Ribosomal protein L33; COG:COG0267: Ribosomal protein L33 [Translation ribosomal structure and biogenesis]; Pfam:PF00471:Ribosomal protein L33; Hamap:MF_00294:Ribosomal protein L33; SUPERFAMILY:SSF57829:Ribosomal protein, zinc-binding domain; rpmG_bact; Belongs to the bacterial ribosomal protein bL33 family. (54 aa)    
Predicted Functional Partners:
rpmB
TIGRFAM:TIGR00009:Ribosomal protein L28; COG:COG0227: Ribosomal protein L28 [Translation ribosomal structure and biogenesis]; Pfam:PF00830:Ribosomal protein L28; Hamap:MF_00373:Ribosomal protein L28; SUPERFAMILY:SSF143800:No Description; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.990
rpmF
TIGRFAM:TIGR01031:Ribosomal protein L32p; COG:COG0333: Ribosomal protein L32 [Translation ribosomal structure and biogenesis]; Pfam:PF01783:Ribosomal protein L32p; Hamap:MF_00340:Ribosomal protein L32p; SUPERFAMILY:SSF57829:Ribosomal protein, zinc-binding domain; rpmF_bact; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.985
rplL
L12: ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
  
 
 0.985
rplU
L21: ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
 
 0.984
rpsR
S18: ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
 
 0.983
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.983
rpsJ
Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
 
 0.983
rpmA
TIGRFAM:TIGR00062:Ribosomal protein L27; COG:COG0211: Ribosomal protein L27 [Translation ribosomal structure and biogenesis]; Pfam:PF01016:Ribosomal protein L27; Hamap:MF_00539:Ribosomal protein L27; PRINTS:PR00063:Ribosomal protein L27; ProSitePatterns:PS00831:Ribosomal protein L27, conserved site; SUPERFAMILY:SSF110324:Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.982
rplC
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
  
 
 0.982
rplJ
Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
  
 
 0.982
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.