STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46439.1Hypothetical protein; COG:COG1801: Uncharacterized conserved protein [Function unknown]; Pfam:PF01904:Protein of unknown function DUF72; Pfam:PF01904:Protein of unknown function DUF72; SUPERFAMILY:SSF117396:Protein of unknown function DUF72. (274 aa)    
Predicted Functional Partners:
AHY46440.1
Xylose isomerase-like TIM barrel; COG:COG1082: Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]; Pfam:PF01261:Xylose isomerase-like, TIM barrel domain; SUPERFAMILY:SSF51658:Xylose isomerase-like, TIM barrel domain.
       0.773
AHY46441.1
CDF: cation diffusion facilitator family transporter; TIGRFAM:TIGR01297:Cation efflux protein; COG:COG1230: Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]; Pfam:PF01545:Cation efflux protein; SUPERFAMILY:SSF161111:No Description.
       0.661
AHY46442.1
COG:COG2309: Leucyl aminopeptidase (aminopeptidase T) [Amino acid transport and metabolism]; Pfam:PF02073:Peptidase M29, aminopeptidase II; Pfam:PF02073:Peptidase M29, aminopeptidase II; SUPERFAMILY:SSF144052:No Description.
       0.538
AHY46438.1
Deacetylase; COG:COG0123: Deacetylases including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF00850:Histone deacetylase domain; Pfam:PF00850:Histone deacetylase domain; PRINTS:PR01270:Histone deacetylase superfamily; SUPERFAMILY:SSF52768:No Description.
       0.523
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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