STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46469.1Hypothetical Protein; Ab initio prediction:Prodigal:2.60. (158 aa)    
Predicted Functional Partners:
AHY46467.1
TIGRFAM:TIGR00614:DNA helicase, ATP-dependent, RecQ type; COG:COG0514: Superfamily II DNA helicase [DNA replication recombination and repair]; Pfam:PF00570:HRDC domain; ProSitePatterns:PS00690:DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site; ProSiteProfiles:PS51194:Helicase, C-terminal; SMART:SM00487:Helicase, superfamily 1/2, ATP-binding domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase; recQ_fam.
       0.623
AHY46468.1
COG:COG0693: Putative intracellular protease/amidase [General function prediction only]; Pfam:PF01965:ThiJ/PfpI; Pfam:PF01965:ThiJ/PfpI; ProSiteProfiles:PS51276:Peptidase C56, PfpI; SUPERFAMILY:SSF52317:No Description.
       0.623
AHY46466.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.530
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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