STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46470.1Hypothetical Protein; Ab initio prediction:Prodigal:2.60. (628 aa)    
Predicted Functional Partners:
AHY46083.1
TIGRFAM:TIGR01064:Pyruvate kinase; COG:COG0469: Pyruvate kinase [Carbohydrate transport and metabolism]; Pfam:PF00224:Pyruvate kinase, barrel; PRINTS:PR01050:Pyruvate kinase; ProSitePatterns:PS00110:Pyruvate kinase, active site; SUPERFAMILY:SSF51621:Pyruvate/Phosphoenolpyruvate kinase-like domain;KEGG: 00010; KEGG: 00230; KEGG: 00620; KEGG: 00710; MetaCyc: PWY-2221; Reactome: REACT_474; UniPathway: UPA00109; pyruv_kin.
   
    0.986
AHY46510.1
Protein of unknown function (DUF2723); COG:COG1287: Uncharacterized membrane protein required for N-linked glycosylation [General function prediction only]; Pfam:PF11028:Protein of unknown function DUF2723.
  
     0.644
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
     0.616
AHY46118.1
Protein of unknown function (DUF2723); COG:COG1807: 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis outer membrane]; Pfam:PF11028:Protein of unknown function DUF2723.
  
     0.605
AHY46117.1
COG:COG5305: Predicted membrane protein [Function unknown]; Pfam:PF11028:Protein of unknown function DUF2723.
  
     0.604
AHY46026.1
COG:COG5305: Predicted membrane protein [Function unknown]; Pfam:PF11028:Protein of unknown function DUF2723.
  
     0.602
rsmH
TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
  
     0.575
AHY46196.1
Acetyltransferase (GNAT) family; COG:COG0456: Acetyltransferases [General function prediction only]; Pfam:PF00583:GNAT domain; ProSiteProfiles:PS51186:GNAT domain; SUPERFAMILY:SSF55729:Acyl-CoA N-acyltransferase.
  
     0.546
AHY47504.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60; PRINTS:PR01852:Streptococcal non-M secreted SibA.
  
     0.543
AHY48042.1
COG:COG0265: Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain [Posttranslational modification protein turnover chaperones]; Pfam:PF13365:Trypsin-like peptidase domain; Pfam:PF13365:Trypsin-like peptidase domain; PRINTS:PR00834:Peptidase S1C; ProSiteProfiles:PS50106:PDZ domain; SMART:SM00228:PDZ domain; SUPERFAMILY:SSF50494:Trypsin-like cysteine/serine peptidase domain.
  
    0.542
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.