STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46474.1COG:COG2409: Predicted drug exporters of the RND superfamily [General function prediction only]; Pfam:PF03176:Membrane transport protein, MMPL type; Pfam:PF03176:Membrane transport protein, MMPL type; ProSiteProfiles:PS50156:Sterol-sensing domain; SUPERFAMILY:SSF82866:No Description. (821 aa)    
Predicted Functional Partners:
AHY46475.1
COG:COG0735: Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]; Pfam:PF01475:Ferric-uptake regulator; Pfam:PF01475:Ferric-uptake regulator; SUPERFAMILY:SSF46785:No Description; Belongs to the Fur family.
       0.605
AHY46473.1
Major Facilitator Superfamily; COG:COG2271: Sugar phosphate permease [Carbohydrate transport and metabolism]; Pfam:PF07690:Major facilitator superfamily; ProSitePatterns:PS00216:Sugar transporter, conserved site; ProSiteProfiles:PS50850:Major facilitator superfamily domain; SUPERFAMILY:SSF103473:Major facilitator superfamily domain, general substrate transporter.
     
 0.493
AHY46472.1
Peptidase family S49; COG:COG0616: Periplasmic serine proteases (ClpP class) [Posttranslational modification protein turnover chaperones / Intracellular trafficking and secretion]; Pfam:PF01343:Peptidase S49; PIRSF:PIRSF001217:Peptidase S49, protease IV; SUPERFAMILY:SSF52096:No Description.
       0.483
rpoZ
rpoZ: DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
   
 0.466
AHY46320.1
COG:COG2047: Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]; Pfam:PF09754:Proteasome assembly chaperone 2; Pfam:PF09754:Proteasome assembly chaperone 2; PIRSF:PIRSF028754:Protein of unknown function DUF774; SUPERFAMILY:SSF159659:No Description.
  
     0.459
AHY45664.1
COG:COG0438: Glycosyltransferase [Cell envelope biogenesis outer membrane]; Pfam:PF00534:Glycosyl transferase, family 1; Pfam:PF00534:Glycosyl transferase, family 1; SUPERFAMILY:SSF53756:No Description.
 
     0.416
AHY47375.1
COG:COG2409: Predicted drug exporters of the RND superfamily [General function prediction only]; Pfam:PF03176:Membrane transport protein, MMPL type; Pfam:PF03176:Membrane transport protein, MMPL type; ProSiteProfiles:PS50156:Sterol-sensing domain; SUPERFAMILY:SSF82866:No Description.
  
   
0.411
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.