STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46491.1TIGRFAM:TIGR04275:Beta propeller repeat, Msarc-type; ProSiteProfiles:PS50194:Filamin/ABP280 repeat-like; SUPERFAMILY:SSF69304:No Description; beta_prop_Msarc. (645 aa)    
Predicted Functional Partners:
AHY46492.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.486
AHY46490.1
Pfam:PF13287:Fn3 associated repeat.
     
 0.482
AHY45486.1
Peptidase family M50; COG:COG1994: Zn-dependent proteases [General function prediction only]; Pfam:PF02163:Peptidase M50; PIRSF:PIRSF006404:Uncharacterised conserved protein UCP006404, peptidase M50/CBS; ProSiteProfiles:PS51371:Cystathionine beta-synthase, core; SMART:SM00116:Cystathionine beta-synthase, core; SUPERFAMILY:SSF54631:No Description; Belongs to the peptidase M50B family.
  
   
 0.469
AHY46048.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
  
 
 0.451
AHY46044.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
  
     0.405
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.