STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46494.1TIGRFAM:TIGR02271:Domain of unknown function DUF2382; COG:COG3861: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF09557:Domain of unknown function DUF2382; SUPERFAMILY:SSF50346:PRC-barrel-like. (352 aa)    
Predicted Functional Partners:
AHY47973.1
PRC-barrel domain; COG:COG5271: AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]; Pfam:PF05239:PRC-barrel domain; SUPERFAMILY:SSF50346:PRC-barrel-like.
  
  
 
0.534
AHY46495.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60; SUPERFAMILY:SSF103473:Major facilitator superfamily domain, general substrate transporter.
       0.533
AHY47729.1
TIGRFAM:TIGR00377:Anti-sigma factor antagonist; COG:COG1366: Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]; Pfam:PF01740:STAS domain; ProSiteProfiles:PS50801:STAS domain; SUPERFAMILY:SSF52091:STAS domain; ant_ant_sig; Belongs to the anti-sigma-factor antagonist family.
  
    0.498
AHY46496.1
Pfam:PF05552:Conserved TM helix.
 
    0.471
AHY47160.1
COG:COG0025: NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]; Pfam:PF00999:Cation/H+ exchanger; Pfam:PF00999:Cation/H+ exchanger.
  
     0.467
AHY47640.1
COG:COG3428: Predicted membrane protein [Function unknown]; Pfam:PF03703:Bacterial PH domain; Pfam:PF03703:Bacterial PH domain; PIRSF:PIRSF026631:Uncharacterised conserved protein UCP026631.
  
    0.454
AHY46176.1
COG:COG1732: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis outer membrane]; Pfam:PF04069:ABC-type glycine betaine transport system, substrate-binding domain; Pfam:PF04069:ABC-type glycine betaine transport system, substrate-binding domain; ProSiteProfiles:PS51257:Prokaryotic membrane lipoprotein lipid attachment site profile.; SUPERFAMILY:SSF53850:No Description.
  
    0.435
AHY47359.1
COG:COG1732: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis outer membrane]; Pfam:PF04069:ABC-type glycine betaine transport system, substrate-binding domain; Pfam:PF04069:ABC-type glycine betaine transport system, substrate-binding domain; SUPERFAMILY:SSF53850:No Description.
  
    0.435
AHY46909.1
TIGRFAM:TIGR00377:Anti-sigma factor antagonist; COG:COG1366: Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]; Pfam:PF01740:STAS domain; ProSiteProfiles:PS50801:STAS domain; SUPERFAMILY:SSF52091:STAS domain; ant_ant_sig; Belongs to the anti-sigma-factor antagonist family.
   
    0.424
AHY47679.1
GlcNAc-PI de-N-acetylase; COG:COG2120: Uncharacterized proteins LmbE homologs [Function unknown]; Pfam:PF02585:N-acetylglucosaminyl phosphatidylinositol deacetylase; SUPERFAMILY:SSF102588:Putative deacetylase LmbE-like domain.
  
     0.408
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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