STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46509.1Cold-shock' DNA-binding domain; COG:COG1278: Cold shock proteins [Transcription]; Pfam:PF00313:Cold-shock protein, DNA-binding; PRINTS:PR00050:Cold-shock protein, DNA-binding; ProSitePatterns:PS00352:Cold-shock conserved site; SMART:SM00357:Cold shock protein; SUPERFAMILY:SSF50249:Nucleic acid-binding, OB-fold. (232 aa)    
Predicted Functional Partners:
AHY46510.1
Protein of unknown function (DUF2723); COG:COG1287: Uncharacterized membrane protein required for N-linked glycosylation [General function prediction only]; Pfam:PF11028:Protein of unknown function DUF2723.
       0.773
AHY46579.1
COG:COG1278: Cold shock proteins [Transcription]; Pfam:PF00313:Cold-shock protein, DNA-binding; Pfam:PF00313:Cold-shock protein, DNA-binding; PIRSF:PIRSF002599:Cold shock, CspA; PRINTS:PR00050:Cold-shock protein, DNA-binding; ProSitePatterns:PS00352:Cold-shock conserved site; SMART:SM00357:Cold shock protein; SUPERFAMILY:SSF50249:Nucleic acid-binding, OB-fold.
  
     0.746
AHY48001.1
COG:COG1278: Cold shock proteins [Transcription]; Pfam:PF00313:Cold-shock protein, DNA-binding; Pfam:PF00313:Cold-shock protein, DNA-binding; PIRSF:PIRSF002599:Cold shock, CspA; PRINTS:PR00050:Cold-shock protein, DNA-binding; ProSitePatterns:PS00352:Cold-shock conserved site; SMART:SM00357:Cold shock protein; SUPERFAMILY:SSF50249:Nucleic acid-binding, OB-fold.
  
     0.742
rpsL
Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
   
 
 0.573
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
   0.555
rplA
Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.
  
   0.485
tuf
EF-Tu: translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
  
 0.469
AHY47240.1
TIGRFAM:TIGR00485:Translation elongation factor EFTu/EF1A, bacterial/organelle; COG:COG0050: GTPases - translation elongation factors [Translation ribosomal structure and biogenesis]; Pfam:PF00009:Elongation factor, GTP-binding domain; Hamap:MF_00118_B:Translation elongation factor EFTu/EF1A, bacterial/organelle; PRINTS:PR00315:Elongation factor, GTP-binding domain; ProSitePatterns:PS00301:Elongation factor, GTP-binding domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
   
  
 0.469
rplQ
TIGRFAM:TIGR00059:Ribosomal protein L17; COG:COG0203: Ribosomal protein L17 [Translation ribosomal structure and biogenesis]; Pfam:PF01196:Ribosomal protein L17; Hamap:MF_01368:Ribosomal protein L17; ProSitePatterns:PS01167:Ribosomal protein L17; SUPERFAMILY:SSF64263:Ribosomal protein L17.
   
   0.463
rpmB
TIGRFAM:TIGR00009:Ribosomal protein L28; COG:COG0227: Ribosomal protein L28 [Translation ribosomal structure and biogenesis]; Pfam:PF00830:Ribosomal protein L28; Hamap:MF_00373:Ribosomal protein L28; SUPERFAMILY:SSF143800:No Description; Belongs to the bacterial ribosomal protein bL28 family.
 
 
 0.455
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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