STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46514.1VanW like protein; COG:COG2720: Uncharacterized vancomycin resistance protein [Defense mechanisms]; Pfam:PF04294:Vancomycin resistance VanW. (545 aa)    
Predicted Functional Partners:
AHY45323.1
COG:COG3872: Predicted metal-dependent enzyme [General function prediction only]; Pfam:PF07136:Protein of unknown function DUF1385; Pfam:PF07136:Protein of unknown function DUF1385.
  
     0.428
AHY47653.1
Bacterial capsule synthesis protein PGA_cap; COG:COG2843: Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis outer membrane]; Pfam:PF09587:Capsule synthesis protein, CapA; SMART:SM00854:Capsule synthesis protein, CapA; SUPERFAMILY:SSF56300:No Description.
  
     0.422
AHY47028.1
UbiA prenyltransferase family; COG:COG0382: 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]; Pfam:PF01040:UbiA prenyltransferase family; Belongs to the UbiA prenyltransferase family.
  
     0.420
AHY46834.1
TIGRFAM:TIGR00350:Cell envelope-related transcriptional attenuator; COG:COG1316: Transcriptional regulator [Transcription]; Pfam:PF03816:Cell envelope-related transcriptional attenuator; lytR_cpsA_psr.
 
     0.412
AHY46549.1
Cysteine-rich secretory protein family; COG:COG2340: Uncharacterized protein with SCP/PR1 domains [Function unknown]; Pfam:PF00188:CAP domain; SUPERFAMILY:SSF55797:CAP domain.
  
     0.401
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.