STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46523.1COG:COG3387: Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]; Pfam:PF00723:Glycoside hydrolase family 15; Pfam:PF00723:Glycoside hydrolase family 15; SUPERFAMILY:SSF48208:Six-hairpin glycosidase-like. (610 aa)    
Predicted Functional Partners:
AHY45547.1
COG:COG0380: Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]; Pfam:PF00982:Glycosyl transferase, family 20; Pfam:PF00982:Glycosyl transferase, family 20; SUPERFAMILY:SSF53756:No Description.
 
   
 0.817
AHY46524.1
COG:COG0388: Predicted amidohydrolase [General function prediction only]; Pfam:PF00795:Carbon-nitrogen hydrolase; Pfam:PF00795:Carbon-nitrogen hydrolase; ProSitePatterns:PS01227:Uncharacterised protein family UPF0012, conserved site; ProSiteProfiles:PS50263:Carbon-nitrogen hydrolase; SUPERFAMILY:SSF56317:Carbon-nitrogen hydrolase.
       0.645
AHY46522.1
COG:COG3238: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF04657:Protein of unknown function DUF606; Pfam:PF04657:Protein of unknown function DUF606.
       0.543
AHY45475.1
TIGRFAM:TIGR02456:Trehalose synthase/alpha-amylase, N-terminal; COG:COG0366: Glycosidases [Carbohydrate transport and metabolism]; Pfam:PF00128:Glycosyl hydrolase, family 13, catalytic domain; SMART:SM00642:Glycosyl hydrolase, family 13, subfamily, catalytic domain; SUPERFAMILY:SSF51445:Glycoside hydrolase, superfamily;KEGG: 00500; MetaCyc: PWY-2622; treS_nterm.
 
   
 0.475
AHY45478.1
TIGRFAM:TIGR02402:Malto-oligosyltrehalose trehalohydrolase; COG:COG0296: 14-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]; Pfam:PF00128:Glycosyl hydrolase, family 13, catalytic domain; PIRSF:PIRSF006337:Malto-oligosyltrehalose trehalohydrolase; SMART:SM00642:Glycosyl hydrolase, family 13, subfamily, catalytic domain; SUPERFAMILY:SSF51445:Glycoside hydrolase, superfamily;MetaCyc: PWY-2661; UniPathway: UPA00299; trehalose_TreZ.
 
  
 0.444
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.