STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46524.1COG:COG0388: Predicted amidohydrolase [General function prediction only]; Pfam:PF00795:Carbon-nitrogen hydrolase; Pfam:PF00795:Carbon-nitrogen hydrolase; ProSitePatterns:PS01227:Uncharacterised protein family UPF0012, conserved site; ProSiteProfiles:PS50263:Carbon-nitrogen hydrolase; SUPERFAMILY:SSF56317:Carbon-nitrogen hydrolase. (283 aa)    
Predicted Functional Partners:
AHY46523.1
COG:COG3387: Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]; Pfam:PF00723:Glycoside hydrolase family 15; Pfam:PF00723:Glycoside hydrolase family 15; SUPERFAMILY:SSF48208:Six-hairpin glycosidase-like.
       0.645
guaA
GMP synthase (glutamine-hydrolyzing), C-terminal domain; Catalyzes the synthesis of GMP from XMP.
   
 
 0.489
AHY46522.1
COG:COG3238: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF04657:Protein of unknown function DUF606; Pfam:PF04657:Protein of unknown function DUF606.
       0.461
AHY46478.1
TIGRFAM:TIGR00229:PAS domain; COG:COG4585: Signal transduction histidine kinase [Signal transduction mechanisms]; Pfam:PF08448:PAS fold-4; ProSiteProfiles:PS50113:PAS-associated, C-terminal; SMART:SM00065:GAF domain; SUPERFAMILY:SSF55785:PAS domain; sensory_box.
  
 
 0.408
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.