STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46550.1TIGRFAM:TIGR02032:Geranylgeranyl reductase family; COG:COG0644: Dehydrogenases (flavoproteins) [Energy production and conversion]; Pfam:PF01494:Monooxygenase, FAD-binding; PRINTS:PR00420:Aromatic-ring hydroxylase-like; SUPERFAMILY:SSF51905:No Description;KEGG: 00061; KEGG: 00351; KEGG: 00360; KEGG: 00361; KEGG: 00364; KEGG: 00380; KEGG: 00622; KEGG: 00623; KEGG: 00624; KEGG: 00640; KEGG: 00943; UniPathway: UPA00940. (417 aa)    
Predicted Functional Partners:
AHY46097.1
Von Willebrand factor type A domain; COG:COG1239: Mg-chelatase subunit ChlI [Coenzyme metabolism]; Pfam:PF13519:von Willebrand factor type A domain; ProSiteProfiles:PS50234:von Willebrand factor, type A; SMART:SM00327:von Willebrand factor, type A; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
  
  
 0.696
AHY46095.1
TIGRFAM:TIGR02257:Cobaltochelatase, CobN subunit; COG:COG1429: Cobalamin biosynthesis protein CobN and related Mg-chelatases [Coenzyme metabolism]; Pfam:PF02514:CobN/magnesium chelatase;KEGG: 00860; UniPathway: UPA00148; cobalto_cobN.
  
  
 0.547
AHY47528.1
Nitrogenase component 1 type Oxidoreductase; COG:COG2710: Nitrogenase molybdenum-iron protein alpha and beta chains [Energy production and conversion]; Pfam:PF00148:Nitrogenase/oxidoreductase, component 1; SUPERFAMILY:SSF53807:No Description.
  
  
 0.538
AHY46551.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.529
AHY46014.1
COG:COG1562: Phytoene/squalene synthetase [Lipid metabolism]; Pfam:PF00494:Squalene/phytoene synthase; Pfam:PF00494:Squalene/phytoene synthase; ProSitePatterns:PS01045:Squalene/phytoene synthase, conserved site; SUPERFAMILY:SSF48576:Terpenoid synthase.
 
  
 0.513
AHY46233.1
COG:COG1755: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF04140:Isoprenylcysteine carboxyl methyltransferase; Pfam:PF04140:Isoprenylcysteine carboxyl methyltransferase.
  
  
 0.497
AHY46234.1
COG:COG3424: Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF00195:Chalcone/stilbene synthase, N-terminal; Pfam:PF00195:Chalcone/stilbene synthase, N-terminal; PIRSF:PIRSF000451:Polyketide synthase, type III; ProSitePatterns:PS00441:Chalcone/stilbene synthase, active site; SUPERFAMILY:SSF53901:Thiolase-like.
  
  
 0.492
AHY47033.1
COG:COG0142: Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]; Pfam:PF00348:Polyprenyl synthetase; Pfam:PF00348:Polyprenyl synthetase; ProSitePatterns:PS00444:Polyprenyl synthetase; SUPERFAMILY:SSF48576:Terpenoid synthase; Belongs to the FPP/GGPP synthase family.
 
 
 0.487
AHY47527.1
Nitrogenase component 1 type Oxidoreductase; COG:COG2710: Nitrogenase molybdenum-iron protein alpha and beta chains [Energy production and conversion]; Pfam:PF00148:Nitrogenase/oxidoreductase, component 1; SUPERFAMILY:SSF53807:No Description.
 
  
 0.451
AHY47122.1
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; COG:COG1250: 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]; Pfam:PF02737:3-hydroxyacyl-CoA dehydrogenase, NAD binding; SUPERFAMILY:SSF51735:No Description;MetaCyc: PWY-1361; MetaCyc: PWY-5109; MetaCyc: PWY-5136; MetaCyc: PWY-5138; MetaCyc: PWY-5789; MetaCyc: PWY-6435; MetaCyc: PWY-735; UniPathway: UPA00659.
  
  
 0.431
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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