STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46569.1COG:COG0744: Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis outer membrane]; Pfam:PF00912:Glycosyl transferase, family 51; Pfam:PF00912:Glycosyl transferase, family 51; SUPERFAMILY:SSF56601:Beta-lactamase/transpeptidase-like. (705 aa)    
Predicted Functional Partners:
AHY46381.1
COG:COG0744: Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis outer membrane]; Pfam:PF00912:Glycosyl transferase, family 51; Pfam:PF00912:Glycosyl transferase, family 51; SUPERFAMILY:SSF56601:Beta-lactamase/transpeptidase-like.
 
 
0.940
AHY45787.1
TIGRFAM:TIGR02074:Penicillin-binding protein 1A; COG:COG0744: Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis outer membrane]; Pfam:PF00912:Glycosyl transferase, family 51; SUPERFAMILY:SSF56601:Beta-lactamase/transpeptidase- like;KEGG: 00230; KEGG: 00310; KEGG: 00524; KEGG: 00550; KEGG: 00780; UniPathway: UPA00219; PBP_1a_fam.
  
  
 
0.919
AHY45799.1
COG:COG1686: D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis outer membrane]; Pfam:PF00768:Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal; Pfam:PF00768:Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal; PRINTS:PR00725:Peptidase S11, D-alanyl-D-alanine carboxypeptidase A; SMART:SM00936:Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal; SUPERFAMILY:SSF56601:Beta-lactamase/transpeptidase-like; Belongs to the peptidase S11 family.
     
 0.911
AHY45549.1
COG:COG1876: D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis outer membrane]; Pfam:PF02557:Peptidase M15B/M15C; SUPERFAMILY:SSF55166:Hedgehog signalling/DD-peptidase zinc-binding domain.
     
  0.900
AHY46788.1
COG:COG0768: Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis outer membrane]; Pfam:PF00905:Penicillin-binding protein, transpeptidase; Pfam:PF00905:Penicillin-binding protein, transpeptidase; SUPERFAMILY:SSF56601:Beta-lactamase/transpeptidase-like.
  
 
 
 0.716
AHY46784.1
COG:COG0772: Bacterial cell division membrane protein [Cell division and chromosome partitioning]; Pfam:PF01098:Cell cycle protein FtsW/RodA; Pfam:PF01098:Cell cycle protein FtsW/RodA; Belongs to the SEDS family.
  
   
 0.702
AHY46414.1
TIGRFAM:TIGR03423:Penicillin-binding protein 2; COG:COG0768: Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis outer membrane]; Pfam:PF00905:Penicillin-binding protein, transpeptidase; SUPERFAMILY:SSF56601:Beta-lactamase/transpeptidase- like;UniPathway: UPA00219; pbp2_mrdA.
  
 
 
 0.676
AHY46818.1
TIGRFAM:TIGR02210:Rod shape-determining protein RodA; COG:COG0772: Bacterial cell division membrane protein [Cell division and chromosome partitioning]; Pfam:PF01098:Cell cycle protein FtsW/RodA; rodA_shape; Belongs to the SEDS family.
  
   
 0.674
murG
UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
  
   
 0.662
AHY45308.1
COG:COG0772: Bacterial cell division membrane protein [Cell division and chromosome partitioning]; Pfam:PF01098:Cell cycle protein FtsW/RodA; Pfam:PF01098:Cell cycle protein FtsW/RodA; Belongs to the SEDS family.
  
   
 0.659
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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