STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46571.1COG:COG1734: DnaK suppressor protein [Signal transduction mechanisms]; Pfam:PF01258:Zinc finger, DksA/TraR C4-type; Pfam:PF01258:Zinc finger, DksA/TraR C4-type; ProSitePatterns:PS01102:Zinc finger, DksA/TraR C4-type conserved site; ProSiteProfiles:PS51128:Zinc finger, DksA/TraR C4-type; SUPERFAMILY:SSF57716:No Description. (125 aa)    
Predicted Functional Partners:
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.838
rpoB
rpoB: DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.684
AHY46572.1
Transport-energizing ATPase, TRC40/GET3/ArsA family; TIGRFAM:TIGR00345:Arsenical pump ATPase, ArsA/GET3; COG:COG0003: Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]; Pfam:PF02374:Anion-transporting ATPase-like domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase; GET3_arsA_TRC40.
       0.648
AHY46573.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.648
rpoZ
rpoZ: DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
 
 0.612
ribBA
ribA: GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
  
 0.575
AHY46574.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.572
rpoA
rpoA: DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.564
hisI
TIGRFAM:TIGR03188:Phosphoribosyl-ATP pyrophosphohydrolase; COG:COG0139: Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]; Pfam:PF01502:Phosphoribosyl-AMP cyclohydrolase domain; Hamap:MF_01020:Phosphoribosyl-ATP pyrophosphohydrolase; SUPERFAMILY:SSF141734:No Description;KEGG: 00340; UniPathway: UPA00031; histidine_hisI; In the N-terminal section; belongs to the PRA-CH family.
   
  
 0.534
AHY46423.1
COG:COG0523: Putative GTPases (G3E family) [General function prediction only]; Pfam:PF02492:CobW/HypB/UreG domain; Pfam:PF02492:CobW/HypB/UreG domain; SMART:SM00833:Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
  
  
 0.533
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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