STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46603.1COG:COG4456: Virulence-associated protein and related proteins [Function unknown]; Pfam:PF04014:AbrB-like domain; Pfam:PF04014:AbrB-like domain; SMART:SM00966:AbrB-like domain; SUPERFAMILY:SSF89447:No Description. (78 aa)    
Predicted Functional Partners:
vapC-2
Putative nucleic acid-binding protein contains PIN domain; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
 
 0.994
AHY46604.1
Methyltransferase domain; COG:COG1002: Type II restriction enzyme methylase subunits [Defense mechanisms]; Pfam:PF13659:Methyltransferase domain; PRINTS:PR00507:N6 adenine-specific DNA methyltransferase, N12 class; ProSitePatterns:PS00092:DNA methylase, N-6 adenine-specific, conserved site; SUPERFAMILY:SSF53335:No Description.
 
     0.604
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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