STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46630.1COG:COG1294: Cytochrome bd-type quinol oxidase subunit 2 [Energy production and conversion]; Pfam:PF02322:Cytochrome d ubiquinol oxidase, subunit II; Pfam:PF02322:Cytochrome d ubiquinol oxidase, subunit II. (352 aa)    
Predicted Functional Partners:
AHY46629.1
COG:COG1271: Cytochrome bd-type quinol oxidase subunit 1 [Energy production and conversion]; Pfam:PF01654:Cytochrome d ubiquinol oxidase, subunit I; Pfam:PF01654:Cytochrome d ubiquinol oxidase, subunit I; PIRSF:PIRSF006446:Cytochrome d ubiquinol oxidase, subunit I.
 0.999
AHY46632.1
CydD: thiol reductant ABC exporter, CydD subunit; TIGRFAM:TIGR02857:ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; COG:COG4988: ABC-type transport system involved in cytochrome bd biosynthesis ATPase and permease components [Energy production and conversion / Posttranslational modification protein turnover chaperones]; Pfam:PF00005:ABC transporter-like; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS50893:ABC transporter-like; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside tr [...]
 
  
 0.990
AHY46633.1
CydC: thiol reductant ABC exporter, CydC subunit; TIGRFAM:TIGR02868:ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; COG:COG4987: ABC-type transport system involved in cytochrome bd biosynthesis fused ATPase and permease components [Energy production and conversion / Posttranslational modification protein turnover chaperones]; Pfam:PF00005:ABC transporter-like; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS50893:ABC transporter-like; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleos [...]
 
  
 0.977
AHY45569.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
  
 
 0.868
AHY45573.1
COG:COG1271: Cytochrome bd-type quinol oxidase subunit 1 [Energy production and conversion]; Pfam:PF01654:Cytochrome d ubiquinol oxidase, subunit I.
  
 
 0.868
AHY46631.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.773
nuoH
NADH:ubiquinone oxidoreductase subunit 1 (chain H); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.
   
 
 0.663
nuoK
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family.
     
 0.653
nuoN
Proton-translocating NADH-quinone oxidoreductase, chain N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.
     
 0.648
AHY45297.1
TIGRFAM:TIGR00384:Succinate dehydrogenase/fumarate reductase iron-sulphur protein; COG:COG0479: Succinate dehydrogenase/fumarate reductase Fe-S protein subunit [Energy production and conversion]; Pfam:PF13085:Succinate dehydogenase/fumarate reductase N-terminal; ProSitePatterns:PS00197:2Fe-2S ferredoxin, iron-sulphur binding site; ProSiteProfiles:PS51085:2Fe-2S ferredoxin-type domain; SUPERFAMILY:SSF54292:2Fe-2S ferredoxin-type domain.
     
 0.643
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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