STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46647.1RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (161 aa)    
Predicted Functional Partners:
alaS
alaS: alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
  
 0.934
mltG
TIGR00247: conserved hypothetical protein, YceG family; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
  
    0.826
AHY46717.1
COG:COG0324: tRNA delta(2)-isopentenylpyrophosphate transferase [Translation ribosomal structure and biogenesis]; Pfam:PF01715:tRNA isopentenyltransferase; Pfam:PF01715:tRNA isopentenyltransferase; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
 
    0.649
AHY46645.1
SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; TIGRFAM:TIGR02980:RNA polymerase sigma-B/F/G type; COG:COG1191: DNA-directed RNA polymerase specialized sigma subunit [Transcription]; Pfam:PF04545:RNA polymerase sigma-70 region 4; PRINTS:PR00046:RNA polymerase sigma-70; SUPERFAMILY:SSF88946:RNA polymerase sigma factor, region 2.
 
     0.617
AHY46644.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.520
AHY46649.1
COG:COG1459: Type II secretory pathway component PulF [Cell motility and secretion / Intracellular trafficking and secretion]; Pfam:PF00482:Type II secretion system F domain; Pfam:PF00482:Type II secretion system F domain; PRINTS:PR00812:GspF/PilC family; ProSitePatterns:PS00874:Type II secretion system conserved site.
       0.483
mnmA
trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.480
AHY46642.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.470
AHY46643.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.470
ruvA
ruvA: Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.
 
  
 0.465
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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