STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46650.1Hypothetical Protein; Ab initio prediction:Prodigal:2.60. (99 aa)    
Predicted Functional Partners:
AHY46651.1
Pfam:PF07510:Domain of unknown function DUF1524.
       0.773
AHY46652.1
TIGRFAM:TIGR01163:Ribulose-phosphate 3-epimerase-like; COG:COG0036: Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]; Pfam:PF00834:Ribulose-phosphate 3-epimerase-like; PIRSF:PIRSF001461:Ribulose-phosphate 3-epimerase; ProSitePatterns:PS01086:Ribulose-phosphate 3-epimerase-like; SUPERFAMILY:SSF51366:Ribulose-phosphate binding barrel.
       0.519
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.