Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| rplM | rplS | RradSPS_1908 | RradSPS_1398 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.998 |
| rplM | rplU | RradSPS_1908 | RradSPS_1532 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | L21: ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.997 |
| rplM | rpmA | RradSPS_1908 | RradSPS_1531 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | TIGRFAM:TIGR00062:Ribosomal protein L27; COG:COG0211: Ribosomal protein L27 [Translation ribosomal structure and biogenesis]; Pfam:PF01016:Ribosomal protein L27; Hamap:MF_00539:Ribosomal protein L27; PRINTS:PR00063:Ribosomal protein L27; ProSitePatterns:PS00831:Ribosomal protein L27, conserved site; SUPERFAMILY:SSF110324:Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.999 |
| rplM | rpmB | RradSPS_1908 | RradSPS_1374 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | TIGRFAM:TIGR00009:Ribosomal protein L28; COG:COG0227: Ribosomal protein L28 [Translation ribosomal structure and biogenesis]; Pfam:PF00830:Ribosomal protein L28; Hamap:MF_00373:Ribosomal protein L28; SUPERFAMILY:SSF143800:No Description; Belongs to the bacterial ribosomal protein bL28 family. | 0.997 |
| rplM | rpmI | RradSPS_1908 | RradSPS_1278 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | TIGRFAM:TIGR00001:Ribosomal protein L35, non-mitochondrial; COG:COG0291: Ribosomal protein L35 [Translation ribosomal structure and biogenesis]; Pfam:PF01632:Ribosomal protein L35; Hamap:MF_00514:Ribosomal protein L35, non-mitochondrial; PRINTS:PR00064:Ribosomal protein L35, non-mitochondrial; SUPERFAMILY:SSF143034:No Description; rpmI_bact; Belongs to the bacterial ribosomal protein bL35 family. | 0.997 |
| rplM | rpsF | RradSPS_1908 | RradSPS_0736 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | S6: ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.997 |
| rplM | rpsL | RradSPS_1908 | RradSPS_1948 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.998 |
| rplM | rpsO | RradSPS_1908 | RradSPS_1422 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.998 |
| rplM | rpsP | RradSPS_1908 | RradSPS_1394 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | TIGRFAM:TIGR00002:Ribosomal protein S16; COG:COG0228: Ribosomal protein S16 [Translation ribosomal structure and biogenesis]; Pfam:PF00886:Ribosomal protein S16; Hamap:MF_00385:Ribosomal protein S16; SUPERFAMILY:SSF54565:Ribosomal protein S16 domain; Belongs to the bacterial ribosomal protein bS16 family. | 0.997 |
| rplM | rpsZ | RradSPS_1908 | RradSPS_1930 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.998 |
| rplS | rplM | RradSPS_1398 | RradSPS_1908 | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.998 |
| rplS | rplU | RradSPS_1398 | RradSPS_1532 | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | L21: ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.997 |
| rplS | rpmA | RradSPS_1398 | RradSPS_1531 | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | TIGRFAM:TIGR00062:Ribosomal protein L27; COG:COG0211: Ribosomal protein L27 [Translation ribosomal structure and biogenesis]; Pfam:PF01016:Ribosomal protein L27; Hamap:MF_00539:Ribosomal protein L27; PRINTS:PR00063:Ribosomal protein L27; ProSitePatterns:PS00831:Ribosomal protein L27, conserved site; SUPERFAMILY:SSF110324:Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.998 |
| rplS | rpmB | RradSPS_1398 | RradSPS_1374 | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | TIGRFAM:TIGR00009:Ribosomal protein L28; COG:COG0227: Ribosomal protein L28 [Translation ribosomal structure and biogenesis]; Pfam:PF00830:Ribosomal protein L28; Hamap:MF_00373:Ribosomal protein L28; SUPERFAMILY:SSF143800:No Description; Belongs to the bacterial ribosomal protein bL28 family. | 0.997 |
| rplS | rpmI | RradSPS_1398 | RradSPS_1278 | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | TIGRFAM:TIGR00001:Ribosomal protein L35, non-mitochondrial; COG:COG0291: Ribosomal protein L35 [Translation ribosomal structure and biogenesis]; Pfam:PF01632:Ribosomal protein L35; Hamap:MF_00514:Ribosomal protein L35, non-mitochondrial; PRINTS:PR00064:Ribosomal protein L35, non-mitochondrial; SUPERFAMILY:SSF143034:No Description; rpmI_bact; Belongs to the bacterial ribosomal protein bL35 family. | 0.997 |
| rplS | rpsF | RradSPS_1398 | RradSPS_0736 | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | S6: ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.997 |
| rplS | rpsL | RradSPS_1398 | RradSPS_1948 | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.997 |
| rplS | rpsO | RradSPS_1398 | RradSPS_1422 | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.997 |
| rplS | rpsP | RradSPS_1398 | RradSPS_1394 | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | TIGRFAM:TIGR00002:Ribosomal protein S16; COG:COG0228: Ribosomal protein S16 [Translation ribosomal structure and biogenesis]; Pfam:PF00886:Ribosomal protein S16; Hamap:MF_00385:Ribosomal protein S16; SUPERFAMILY:SSF54565:Ribosomal protein S16 domain; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
| rplS | rpsZ | RradSPS_1398 | RradSPS_1930 | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.994 |
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