STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46663.1Hypothetical Protein; Ab initio prediction:Prodigal:2.60. (153 aa)    
Predicted Functional Partners:
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
       0.701
AHY46661.1
TIGRFAM:TIGR00095:RNA methyltransferase, RsmD; COG:COG0742: N6-adenine-specific methylase [DNA replication recombination and repair]; Pfam:PF03602:RNA methyltransferase, RsmD; PIRSF:PIRSF004553:RNA methyltransferase, RsmD; ProSitePatterns:PS00092:DNA methylase, N-6 adenine-specific, conserved site; SUPERFAMILY:SSF53335:No Description.
       0.658
AHY46825.1
Pfam:PF12773:Double zinc ribbon.
  
     0.644
AHY46664.1
COG:COG1399: Predicted metal-binding possibly nucleic acid-binding protein [General function prediction only]; Pfam:PF02620:Protein of unknown function DUF177.
       0.623
sepF
Hypothetical protein; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.
  
     0.596
atpE
ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
 
 0.564
AHY45311.1
Protein of unknown function (DUF2662); COG:COG1716: FOG: FHA domain [Signal transduction mechanisms]; Pfam:PF12401:Protein of unknown function DUF3662; ProSiteProfiles:PS50006:Forkhead-associated (FHA) domain; SMART:SM00240:Forkhead-associated (FHA) domain; SUPERFAMILY:SSF49879:SMAD/FHA domain.
  
     0.545
AHY46658.1
TIGRFAM:TIGR03599:DAK2 domain-containing protein YloV; COG:COG1461: Predicted kinase related to dihydroxyacetone kinase [General function prediction only]; Pfam:PF13684:Dihydroxyacetone kinase family; ProSiteProfiles:PS51480:Dak phosphatase; SUPERFAMILY:SSF101473:Dak phosphatase.
 
     0.539
rpmF
TIGRFAM:TIGR01031:Ribosomal protein L32p; COG:COG0333: Ribosomal protein L32 [Translation ribosomal structure and biogenesis]; Pfam:PF01783:Ribosomal protein L32p; Hamap:MF_00340:Ribosomal protein L32p; SUPERFAMILY:SSF57829:Ribosomal protein, zinc-binding domain; rpmF_bact; Belongs to the bacterial ribosomal protein bL32 family.
       0.506
AHY47013.1
O-Antigen ligase; COG:COG3063: Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]; Pfam:PF04932:O-antigen ligase-related; ProSiteProfiles:PS50005:Tetratricopeptide repeat; SMART:SM00028:Tetratricopeptide repeat; SUPERFAMILY:SSF48452:No Description.
  
     0.480
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.