STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmFTIGRFAM:TIGR01031:Ribosomal protein L32p; COG:COG0333: Ribosomal protein L32 [Translation ribosomal structure and biogenesis]; Pfam:PF01783:Ribosomal protein L32p; Hamap:MF_00340:Ribosomal protein L32p; SUPERFAMILY:SSF57829:Ribosomal protein, zinc-binding domain; rpmF_bact; Belongs to the bacterial ribosomal protein bL32 family. (61 aa)    
Predicted Functional Partners:
rpmB
TIGRFAM:TIGR00009:Ribosomal protein L28; COG:COG0227: Ribosomal protein L28 [Translation ribosomal structure and biogenesis]; Pfam:PF00830:Ribosomal protein L28; Hamap:MF_00373:Ribosomal protein L28; SUPERFAMILY:SSF143800:No Description; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.991
rpmJ
TIGRFAM:TIGR01022:Ribosomal protein L36; COG:COG0257: Ribosomal protein L36 [Translation ribosomal structure and biogenesis]; Pfam:PF00444:Ribosomal protein L36; Hamap:MF_00251:Ribosomal protein L36; ProSitePatterns:PS00828:Ribosomal protein L36; SUPERFAMILY:SSF57840:Ribosomal protein L36; rpmJ_bact; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.989
rpsP
TIGRFAM:TIGR00002:Ribosomal protein S16; COG:COG0228: Ribosomal protein S16 [Translation ribosomal structure and biogenesis]; Pfam:PF00886:Ribosomal protein S16; Hamap:MF_00385:Ribosomal protein S16; SUPERFAMILY:SSF54565:Ribosomal protein S16 domain; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.988
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.987
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
  
 
 0.986
rpsF
S6: ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
 
 0.985
rpmG
TIGRFAM:TIGR01023:Ribosomal protein L33; COG:COG0267: Ribosomal protein L33 [Translation ribosomal structure and biogenesis]; Pfam:PF00471:Ribosomal protein L33; Hamap:MF_00294:Ribosomal protein L33; SUPERFAMILY:SSF57829:Ribosomal protein, zinc-binding domain; rpmG_bact; Belongs to the bacterial ribosomal protein bL33 family.
  
 
 0.985
rpmI
TIGRFAM:TIGR00001:Ribosomal protein L35, non-mitochondrial; COG:COG0291: Ribosomal protein L35 [Translation ribosomal structure and biogenesis]; Pfam:PF01632:Ribosomal protein L35; Hamap:MF_00514:Ribosomal protein L35, non-mitochondrial; PRINTS:PR00064:Ribosomal protein L35, non-mitochondrial; SUPERFAMILY:SSF143034:No Description; rpmI_bact; Belongs to the bacterial ribosomal protein bL35 family.
  
 
 0.985
rpsB
TIGRFAM:TIGR01011:Ribosomal protein S2, bacteria/mitochondria/plastid; COG:COG0052: Ribosomal protein S2 [Translation ribosomal structure and biogenesis]; Pfam:PF00318:Ribosomal protein S2; Hamap:MF_00291_B:Ribosomal protein S2, bacteria/mitochondria/plastid; PRINTS:PR00395:Ribosomal protein S2; ProSitePatterns:PS00962:Ribosomal protein S2, conserved site; SUPERFAMILY:SSF52313:Ribosomal protein S2, flavodoxin-like domain; rpsB_bact; Belongs to the universal ribosomal protein uS2 family.
  
 
 0.985
rplU
L21: ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.985
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.