STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46686.1TIGRFAM:TIGR02479:RNA polymerase sigma factor, FliA/WhiG; COG:COG1191: DNA-directed RNA polymerase specialized sigma subunit [Transcription]; Pfam:PF04545:RNA polymerase sigma-70 region 4; PRINTS:PR00046:RNA polymerase sigma-70; ProSitePatterns:PS00715:RNA polymerase sigma-70; SUPERFAMILY:SSF88659:RNA polymerase sigma factor, region 3/4; FliA_WhiG. (273 aa)    
Predicted Functional Partners:
AHY46685.1
dprA: DNA protecting protein DprA; TIGRFAM:TIGR00732:DNA recombination-mediator protein A; COG:COG0758: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication recombination and repair / Intracellular trafficking and secretion]; Pfam:PF02481:DNA recombination-mediator protein A; SUPERFAMILY:SSF102405:No Description.
  
    0.788
AHY46684.1
TIGRFAM:TIGR00368:Mg chelatase-related protein; COG:COG0606: Predicted ATPase with chaperone activity [Posttranslational modification protein turnover chaperones]; Pfam:PF01078:Magnesium chelatase, ChlI subunit; PRINTS:PR01657:Mini-chromosome maintenance, DNA-dependent ATPase; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
       0.785
AHY46246.1
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.662
AHY46725.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
    
 
 0.659
rpoB
rpoB: DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.637
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.633
AHY45546.1
COG:COG2172: Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]; Pfam:PF13581:Histidine kinase-like ATPase domain; Pfam:PF13581:Histidine kinase-like ATPase domain; SUPERFAMILY:SSF55874:Histidine kinase-like ATPase, ATP-binding domain.
  
 
 0.619
AHY47824.1
GGDEF: diguanylate cyclase (GGDEF) domain; TIGRFAM:TIGR00254:GGDEF domain; COG:COG5001: Predicted signal transduction protein containing a membrane domain an EAL and a GGDEF domain [Signal transduction mechanisms]; Pfam:PF00563:Diguanylate phosphodiesterase, EAL domain; ProSiteProfiles:PS50113:PAS-associated, C-terminal; SMART:SM00052:Diguanylate phosphodiesterase, EAL domain; SUPERFAMILY:SSF141868:Diguanylate phosphodiesterase, EAL domain.
 
  
 0.617
AHY46004.1
TIGRFAM:TIGR00229:PAS domain; COG:COG2200: FOG: EAL domain [Signal transduction mechanisms]; Pfam:PF00563:Diguanylate phosphodiesterase, EAL domain; ProSiteProfiles:PS50113:PAS-associated, C-terminal; SMART:SM00052:Diguanylate phosphodiesterase, EAL domain; SUPERFAMILY:SSF141868:Diguanylate phosphodiesterase, EAL domain; sensory_box.
 
  
 0.613
AHY46220.1
GGDEF: diguanylate cyclase (GGDEF) domain; TIGRFAM:TIGR00254:GGDEF domain; COG:COG2199: FOG: GGDEF domain [Signal transduction mechanisms]; Pfam:PF00990:GGDEF domain; ProSiteProfiles:PS50113:PAS-associated, C-terminal; SMART:SM00267:GGDEF domain; SUPERFAMILY:SSF55073:Adenylyl cyclase class-3/4/guanylyl cyclase.
 
  
 0.612
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (18%) [HD]
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