STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tsfTsf: translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. (195 aa)    
Predicted Functional Partners:
rpsB
TIGRFAM:TIGR01011:Ribosomal protein S2, bacteria/mitochondria/plastid; COG:COG0052: Ribosomal protein S2 [Translation ribosomal structure and biogenesis]; Pfam:PF00318:Ribosomal protein S2; Hamap:MF_00291_B:Ribosomal protein S2, bacteria/mitochondria/plastid; PRINTS:PR00395:Ribosomal protein S2; ProSitePatterns:PS00962:Ribosomal protein S2, conserved site; SUPERFAMILY:SSF52313:Ribosomal protein S2, flavodoxin-like domain; rpsB_bact; Belongs to the universal ribosomal protein uS2 family.
 0.998
frr
Frr: ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.
 
 
 0.993
pyrH
UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
 
  
 0.970
tuf
EF-Tu: translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
 0.963
AHY47240.1
TIGRFAM:TIGR00485:Translation elongation factor EFTu/EF1A, bacterial/organelle; COG:COG0050: GTPases - translation elongation factors [Translation ribosomal structure and biogenesis]; Pfam:PF00009:Elongation factor, GTP-binding domain; Hamap:MF_00118_B:Translation elongation factor EFTu/EF1A, bacterial/organelle; PRINTS:PR00315:Elongation factor, GTP-binding domain; ProSitePatterns:PS00301:Elongation factor, GTP-binding domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
   
 0.963
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 0.950
rplL
L12: ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
 
 0.948
AHY47086.1
S1 RNA binding domain; COG:COG0539: Ribosomal protein S1 [Translation ribosomal structure and biogenesis]; Pfam:PF00575:Ribosomal protein S1, RNA-binding domain; PIRSF:PIRSF002111:Ribosomal protein S1; PRINTS:PR00681:Ribosomal protein S1; ProSiteProfiles:PS50126:Ribosomal protein S1, RNA-binding domain; SMART:SM00316:RNA-binding domain, S1; SUPERFAMILY:SSF50249:Nucleic acid-binding, OB-fold.
  
 
 0.931
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.931
rpsI
COG:COG0103: Ribosomal protein S9 [Translation ribosomal structure and biogenesis]; Pfam:PF00380:Ribosomal protein S9; Hamap:MF_00532_B:Ribosomal protein S9, bacterial/plastid; Pfam:PF00380:Ribosomal protein S9; ProSitePatterns:PS00360:Ribosomal protein S9, conserved site; SUPERFAMILY:SSF54211:Ribosomal protein S5 domain 2-type fold; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.930
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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