STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46709.1COG:COG1674: DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]; Pfam:PF01580:Cell division protein FtsK/SpoIIIE; Pfam:PF01580:Cell division protein FtsK/SpoIIIE; ProSiteProfiles:PS50901:Cell division protein FtsK/SpoIIIE; SMART:SM00843:DNA translocase FtsK gamma; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase; Belongs to the FtsK/SpoIIIE/SftA family. (761 aa)    
Predicted Functional Partners:
rnj
Putative hydrolase of the metallo-beta-lactamase superfamily; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
 
    0.861
AHY48049.1
TIGRFAM:TIGR00180:ParB/RepB/Spo0J partition protein family; COG:COG1475: Predicted transcriptional regulators [Transcription]; Pfam:PF02195:ParB-like nuclease; SMART:SM00470:ParB-like nuclease; SUPERFAMILY:SSF109709:No Description; parB_part; Belongs to the ParB family.
  
  
 0.811
AHY46710.1
Helix-turn-helix domain; COG:COG1426: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF13413:Helix-turn-helix domain.
     
 0.700
mraZ
TIGRFAM:TIGR00242:MraZ; COG:COG2001: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF02381:MraZ domain; Hamap:MF_01008:MraZ; SUPERFAMILY:SSF89447:No Description; Belongs to the MraZ family.
 
  
 0.693
AHY46781.1
POTRA domain, FtsQ-type; COG:COG1589: Cell division septal protein [Cell envelope biogenesis outer membrane]; Pfam:PF08478:Polypeptide-transport-associated, FtsQ-type.
   
 
 0.690
recA
Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
 
  
 0.673
AHY46278.1
COG:COG2256: ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication recombination and repair]; Pfam:PF12002:MgsA AAA+ ATPase C-terminal; Pfam:PF12002:MgsA AAA+ ATPase C-terminal; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF48019:DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal.
  
 0.669
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
    
 0.666
AHY47087.1
COG:COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication recombination and repair]; Pfam:PF00476:DNA-directed DNA polymerase, family A, palm domain; PRINTS:PR00868:DNA polymerase A; ProSitePatterns:PS00447:DNA-directed DNA polymerase, family A, conserved site; SMART:SM00475:5'-3' exonuclease, N-terminal; SUPERFAMILY:SSF56672:No Description.
 
  
 0.658
AHY46788.1
COG:COG0768: Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis outer membrane]; Pfam:PF00905:Penicillin-binding protein, transpeptidase; Pfam:PF00905:Penicillin-binding protein, transpeptidase; SUPERFAMILY:SSF56601:Beta-lactamase/transpeptidase-like.
 
 
 0.645
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (18%) [HD]
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