STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46752.1Hypothetical Protein; Ab initio prediction:Prodigal:2.60. (204 aa)    
Predicted Functional Partners:
aroQ
3-dehydroquinate dehydratase II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
       0.519
aroB
aroB: 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
       0.519
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.519
aroC
aroC: chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
       0.519
AHY46753.1
COG:COG3167: Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]; Pfam:PF04350:Pilus assembly protein, PilO.
       0.512
AHY46754.1
COG:COG3166: Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]; Pfam:PF05137:Fimbrial assembly PilN.
       0.512
AHY46755.1
TIGRFAM:TIGR01175:Type IV pilus assembly protein PilM; COG:COG4972: Tfp pilus assembly protein ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]; Pfam:PF11104:Type IV pilus assembly protein PilM; SUPERFAMILY:SSF53067:No Description.
       0.512
AHY46756.1
COG:COG1044: UDP-3-O-[3-hydroxymyristoyl]; Pfam:PF00132:Bacterial transferase hexapeptide repeat; SUPERFAMILY:SSF51161:Trimeric LpxA-like.
       0.442
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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