STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46801.1COG:COG1702: Phosphate starvation-inducible protein PhoH predicted ATPase [Signal transduction mechanisms]; Pfam:PF02562:PhoH-like protein; Pfam:PF02562:PhoH-like protein; SMART:SM00322:K Homology domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase. (348 aa)    
Predicted Functional Partners:
ybeY
TIGR00043: probable rRNA maturation factor YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
 
  
 0.958
recO
Reco: DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
    0.800
era
Era: GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
 
  
 0.783
AHY46798.1
COG:COG0818: Diacylglycerol kinase [Cell envelope biogenesis outer membrane]; Pfam:PF01219:Diacylglycerol kinase, prokaryotic; Pfam:PF01219:Diacylglycerol kinase, prokaryotic; ProSitePatterns:PS01069:Diacylglycerol kinase, prokaryotic.
  
  
 0.724
AHY46803.1
TIGR00046: RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
 
     0.708
AHY46802.1
Hypothetical protein; COG:COG1610: Uncharacterized conserved protein [Function unknown]; Pfam:PF09424:Uncharacterised domain YOR215C, mitochondrial; Pfam:PF09424:Uncharacterised domain YOR215C, mitochondrial; SUPERFAMILY:SSF89095:Aspartyl/glutamyl-tRNA amidotransferase subunit B-related.
       0.706
AHY46797.1
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
  
    0.687
hrcA
hrcA: heat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.
       0.639
AHY46800.1
TIGRFAM:TIGR00277:Uncharacterised domain HDIG; COG:COG1480: Predicted membrane-associated HD superfamily hydrolase [General function prediction only]; Pfam:PF07697:Metal-dependent phosphohydrolase, 7TM extracellular domain; SMART:SM00471:HD/PDEase domain; SUPERFAMILY:SSF109604:No Description;KEGG: 00230; KEGG: 00240.
     
 0.629
cmk
TIGRFAM:TIGR00017:Cytidylate kinase; COG:COG0283: Cytidylate kinase [Nucleotide transport and metabolism]; Pfam:PF02224:Cytidylate kinase domain; Hamap:MF_00238:Cytidylate kinase; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase;KEGG: 00240.
 
    0.593
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (26%) [HD]
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