STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46810.1Helix-hairpin-helix motif; COG:COG1555: DNA uptake protein and related DNA-binding proteins [DNA replication recombination and repair]; Pfam:PF12836:Helix-hairpin-helix motif; SMART:SM00278:Helix-hairpin-helix DNA-binding motif, class 1; SUPERFAMILY:SSF47781:RuvA domain 2-like. (156 aa)    
Predicted Functional Partners:
AHY46809.1
TIGRFAM:TIGR00360:ComEC/Rec2-related protein; COG:COG0658: Predicted membrane metal-binding protein [General function prediction only]; Pfam:PF03772:ComEC/Rec2-related protein; ComEC_N-term.
  
  
 0.932
AHY46808.1
TIGRFAM:TIGR01128:DNA polymerase III, delta subunit; COG:COG1466: DNA polymerase III delta subunit [DNA replication recombination and repair]; Pfam:PF06144:DNA polymerase III, delta; SUPERFAMILY:SSF48019:DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal.
       0.751
nadD
TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
 
     0.614
AHY46135.1
COG:COG1989: Type II secretory pathway prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification protein turnover chaperones / Intracellular trafficking and secretion]; Pfam:PF06750:Peptidase A24A, N-terminal; Pfam:PF06750:Peptidase A24A, N-terminal.
   
  
 0.608
AHY47970.1
COG:COG4552: Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]; Pfam:PF13530:Sterol carrier protein domain; Pfam:PF13530:Sterol carrier protein domain; ProSiteProfiles:PS51186:GNAT domain; SUPERFAMILY:SSF55729:Acyl-CoA N-acyltransferase.
 
    0.597
AHY46146.1
COG:COG1459: Type II secretory pathway component PulF [Cell motility and secretion / Intracellular trafficking and secretion]; Pfam:PF00482:Type II secretion system F domain; Pfam:PF00482:Type II secretion system F domain; PRINTS:PR00812:GspF/PilC family; ProSitePatterns:PS00874:Type II secretion system conserved site.
  
  
 0.548
AHY46649.1
COG:COG1459: Type II secretory pathway component PulF [Cell motility and secretion / Intracellular trafficking and secretion]; Pfam:PF00482:Type II secretion system F domain; Pfam:PF00482:Type II secretion system F domain; PRINTS:PR00812:GspF/PilC family; ProSitePatterns:PS00874:Type II secretion system conserved site.
  
  
 0.548
rsfS
Iojap-like ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
       0.546
AHY45668.1
Competence/damage-inducible protein CinA N-terminal domain; TIGRFAM:TIGR00200:Competence-induced protein CinA; COG:COG1058: Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]; Pfam:PF02464:CinA, C-terminal; Hamap:MF_00226_B:Competence-induced protein CinA; PIRSF:PIRSF006728:Competence-induced protein CinA; SMART:SM00852:Molybdopterin binding domain; SUPERFAMILY:SSF142433:No Description; cinA_nterm.
     
 0.539
obg
Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.
       0.532
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (18%) [HD]
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