STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46819.1TIGRFAM:TIGR03426:Cell shape-determining protein MreD; COG:COG2891: Cell shape-determining protein [Cell envelope biogenesis outer membrane]; Pfam:PF04093:Cell shape-determining protein MreD; shape_MreD. (172 aa)    
Predicted Functional Partners:
AHY46818.1
TIGRFAM:TIGR02210:Rod shape-determining protein RodA; COG:COG0772: Bacterial cell division membrane protein [Cell division and chromosome partitioning]; Pfam:PF01098:Cell cycle protein FtsW/RodA; rodA_shape; Belongs to the SEDS family.
       0.773
AHY46820.1
Cell shape-determining protein; Involved in formation and maintenance of cell shape.
       0.613
AHY46821.1
TIGRFAM:TIGR00904:Cell shape determining protein MreB/Mrl; COG:COG1077: Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]; Pfam:PF06723:Cell shape determining protein MreB/Mrl; PRINTS:PR01652:Cell shape determining protein MreB/Mrl; SUPERFAMILY:SSF53067:No Description.
       0.571
AHY46817.1
Rieske [2Fe-2S] domain; COG:COG2220: Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]; Pfam:PF00355:Rieske [2Fe-2S] iron-sulphur domain; ProSiteProfiles:PS51296:Rieske [2Fe-2S] iron-sulphur domain; SUPERFAMILY:SSF56281:No Description.
       0.498
AHY46816.1
COG:COG0769: UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis outer membrane]; Pfam:PF08353:Domain of unknown function DUF1727; Pfam:PF08353:Domain of unknown function DUF1727; SUPERFAMILY:SSF53623:Mur ligase, central.
       0.431
AHY46822.1
TIGRFAM:TIGR00608:RadC protein; COG:COG2003: DNA repair proteins [DNA replication recombination and repair]; Pfam:PF04002:RadC-like JAB domain; ProSitePatterns:PS01302:Uncharacterised protein family UPF0758, conserved site; Belongs to the UPF0758 family.
       0.426
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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