STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46834.1TIGRFAM:TIGR00350:Cell envelope-related transcriptional attenuator; COG:COG1316: Transcriptional regulator [Transcription]; Pfam:PF03816:Cell envelope-related transcriptional attenuator; lytR_cpsA_psr. (334 aa)    
Predicted Functional Partners:
sepF
Hypothetical protein; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.
  
   
 0.690
AHY46833.1
Sodium/hydrogen exchanger family; COG:COG4651: Kef-type K+ transport system predicted NAD-binding component [Inorganic ion transport and metabolism]; Pfam:PF00999:Cation/H+ exchanger; ProSiteProfiles:PS51202:Regulator of K+ conductance, C-terminal; SUPERFAMILY:SSF51735:No Description; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
       0.620
recF
Recf: DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.
  
     0.598
cobB-2
COG:COG0846: NAD-dependent protein deacetylases SIR2 family [Transcription]; Pfam:PF02146:Sirtuin family; Hamap:MF_01121:Sirtuin, classIII; Pfam:PF02146:Sirtuin family; ProSiteProfiles:PS50305:Sirtuin family, catalytic core domain; SUPERFAMILY:SSF52467:No Description; Belongs to the sirtuin family. Class III subfamily.
  
    0.589
AHY45520.1
COG:COG0472: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis outer membrane]; Pfam:PF00953:Glycosyl transferase, family 4; Pfam:PF00953:Glycosyl transferase, family 4.
 
  
 0.588
AHY47068.1
Hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
     0.569
AHY46622.1
Sulfotransferase family; COG:COG3551: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF13469:Sulfotransferase family; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
     
 0.461
AHY46816.1
COG:COG0769: UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis outer membrane]; Pfam:PF08353:Domain of unknown function DUF1727; Pfam:PF08353:Domain of unknown function DUF1727; SUPERFAMILY:SSF53623:Mur ligase, central.
 
     0.455
AHY45742.1
TIGRFAM:TIGR03025:Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; COG:COG2148: Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis outer membrane]; Pfam:PF02397:Bacterial sugar transferase; EPS_sugtrans.
     
 0.452
AHY47001.1
TIGRFAM:TIGR03022:Undecaprenyl-phosphate galactose phosphotransferase, WbaP; COG:COG2148: Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis outer membrane]; Pfam:PF02397:Bacterial sugar transferase; WbaP_sugtrans.
     
 0.452
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.