STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlmHHypothetical protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. (157 aa)    
Predicted Functional Partners:
AHY46890.1
COG:COG1235: Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]; Pfam:PF00753:Beta-lactamase-like; Pfam:PF00753:Beta-lactamase-like; SUPERFAMILY:SSF56281:No Description.
 
     0.744
rsfS
Iojap-like ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
  
  
 0.726
argS
argS: arginine--tRNA ligase; TIGRFAM:TIGR00456:Arginine-tRNA ligase, class Ia; COG:COG0018: Arginyl-tRNA synthetase [Translation ribosomal structure and biogenesis]; Pfam:PF00750:Arginyl-tRNA synthetase, class Ia, core; Hamap:MF_00123:Arginine-tRNA ligase, class Ia; PRINTS:PR01038:Arginyl-tRNA synthetase, class Ia, core; ProSitePatterns:PS00178:Aminoacyl-tRNA synthetase, class I, conserved site; SMART:SM00836:DALR anticodon binding; SUPERFAMILY:SSF52374:No Description;KEGG: 00970; Reactome: REACT_71.
  
    0.689
AHY46888.1
Pfam:PF11213:Protein of unknown function DUF3006.
       0.628
AHY46892.1
Pfam:PF13668:Ferritin-like domain; ProSiteProfiles:PS51318:Twin-arginine translocation pathway, signal sequence; SUPERFAMILY:SSF47240:Ferritin-like superfamily.
 
     0.615
AHY46661.1
TIGRFAM:TIGR00095:RNA methyltransferase, RsmD; COG:COG0742: N6-adenine-specific methylase [DNA replication recombination and repair]; Pfam:PF03602:RNA methyltransferase, RsmD; PIRSF:PIRSF004553:RNA methyltransferase, RsmD; ProSitePatterns:PS00092:DNA methylase, N-6 adenine-specific, conserved site; SUPERFAMILY:SSF53335:No Description.
 
   
 0.604
AHY46891.1
COG:COG3764: Sortase (surface protein transpeptidase) [Cell envelope biogenesis outer membrane]; Pfam:PF04203:Sortase family; SUPERFAMILY:SSF63817:Sortase domain.
       0.561
AHY46893.1
Pfam:PF13668:Ferritin-like domain; ProSiteProfiles:PS51318:Twin-arginine translocation pathway, signal sequence; SUPERFAMILY:SSF47240:Ferritin-like superfamily.
       0.554
rsmI
TIGR00096: putative S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
 
   
 0.527
nadD
TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
  
  
 0.493
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.