STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46891.1COG:COG3764: Sortase (surface protein transpeptidase) [Cell envelope biogenesis outer membrane]; Pfam:PF04203:Sortase family; SUPERFAMILY:SSF63817:Sortase domain. (277 aa)    
Predicted Functional Partners:
AHY46892.1
Pfam:PF13668:Ferritin-like domain; ProSiteProfiles:PS51318:Twin-arginine translocation pathway, signal sequence; SUPERFAMILY:SSF47240:Ferritin-like superfamily.
       0.773
AHY46893.1
Pfam:PF13668:Ferritin-like domain; ProSiteProfiles:PS51318:Twin-arginine translocation pathway, signal sequence; SUPERFAMILY:SSF47240:Ferritin-like superfamily.
       0.757
AHY46890.1
COG:COG1235: Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]; Pfam:PF00753:Beta-lactamase-like; Pfam:PF00753:Beta-lactamase-like; SUPERFAMILY:SSF56281:No Description.
       0.639
rlmH
Hypothetical protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
       0.561
AHY46894.1
TIGRFAM:TIGR02937:RNA polymerase sigma-70 like domain; COG:COG1595: DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog [Transcription]; Pfam:PF04542:RNA polymerase sigma-70 region 2; ProSitePatterns:PS01063:RNA polymerase sigma factor 70, ECF, conserved site; SUPERFAMILY:SSF88946:RNA polymerase sigma factor, region 2.
       0.499
AHY46390.1
Acetyltransferase (GNAT) family; COG:COG0456: Acetyltransferases [General function prediction only]; Pfam:PF00583:GNAT domain; ProSiteProfiles:PS51186:GNAT domain; SUPERFAMILY:SSF55729:Acyl-CoA N-acyltransferase.
  
     0.467
argS
argS: arginine--tRNA ligase; TIGRFAM:TIGR00456:Arginine-tRNA ligase, class Ia; COG:COG0018: Arginyl-tRNA synthetase [Translation ribosomal structure and biogenesis]; Pfam:PF00750:Arginyl-tRNA synthetase, class Ia, core; Hamap:MF_00123:Arginine-tRNA ligase, class Ia; PRINTS:PR01038:Arginyl-tRNA synthetase, class Ia, core; ProSitePatterns:PS00178:Aminoacyl-tRNA synthetase, class I, conserved site; SMART:SM00836:DALR anticodon binding; SUPERFAMILY:SSF52374:No Description;KEGG: 00970; Reactome: REACT_71.
       0.464
AHY46888.1
Pfam:PF11213:Protein of unknown function DUF3006.
       0.464
AHY46895.1
Anti-sigma-K factor rskA; COG:COG5343: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF10099:Anti-sigma K factor RskA.
       0.445
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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