STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46906.1COG:COG1802: Transcriptional regulators [Transcription]; Pfam:PF07729:GntR, C-terminal; Pfam:PF07729:GntR, C-terminal; PRINTS:PR00035:Transcription regulator HTH, GntR; ProSiteProfiles:PS50949:Transcription regulator HTH, GntR; SMART:SM00895:GntR, C-terminal; SUPERFAMILY:SSF48008:Fatty acid responsive transcription factor FadR, C-terminal. (232 aa)    
Predicted Functional Partners:
AHY46904.1
HMGL-like; COG:COG0119: Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]; Pfam:PF00682:Pyruvate carboxyltransferase; ProSiteProfiles:PS50991:Pyruvate carboxyltransferase; SUPERFAMILY:SSF51569:No Description.
       0.778
AHY46905.1
COG:COG1804: Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]; Pfam:PF02515:CoA-transferase family III; Pfam:PF02515:CoA-transferase family III; SUPERFAMILY:SSF89796:CoA-transferase family III domain; Belongs to the CoA-transferase III family.
       0.778
ispE
ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
    
 0.543
AHY46901.1
Isochorismatase family; COG:COG1335: Amidases related to nicotinamidase [Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF00857:Isochorismatase-like; SUPERFAMILY:SSF52499:Isochorismatase-like.
 
     0.529
AHY46903.1
COG:COG0145: N-methylhydantoinase A/acetone carboxylase beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF01968:Hydantoinase/oxoprolinase; Pfam:PF01968:Hydantoinase/oxoprolinase; SUPERFAMILY:SSF53067:No Description.
       0.524
AHY46902.1
COG:COG0146: N-methylhydantoinase B/acetone carboxylase alpha subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF02538:Hydantoinase B/oxoprolinase; Pfam:PF02538:Hydantoinase B/oxoprolinase.
       0.523
AHY46907.1
TIGRFAM:TIGR02316:Propionate--CoA ligase; COG:COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]; Pfam:PF00501:AMP-dependent synthetase/ligase; ProSitePatterns:PS00455:AMP-binding, conserved site; SUPERFAMILY:SSF56801:No Description;KEGG: 00640; MetaCyc: PWY-3941; UniPathway: UPA00946; propion_prpE.
     
 0.423
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.