STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46943.1Bacterial transcriptional repressor; COG:COG1309: Transcriptional regulator [Transcription]; Pfam:PF13977:Bacterial transcriptional repressor; PRINTS:PR00455:DNA-binding HTH domain, TetR-type; ProSiteProfiles:PS50977:DNA-binding HTH domain, TetR-type; SUPERFAMILY:SSF46689:Homeodomain-like. (216 aa)    
Predicted Functional Partners:
AHY46940.1
COG:COG1001: Adenine deaminase [Nucleotide transport and metabolism]; Pfam:PF13382:Adenine deaminase C-terminal domain; Pfam:PF13382:Adenine deaminase C-terminal domain; SUPERFAMILY:SSF51338:Metal-dependent hydrolase, composite domain.
 
     0.715
AHY46944.1
COG:COG1024: Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]; Pfam:PF00378:Crotonase superfamily; Pfam:PF00378:Crotonase superfamily; SUPERFAMILY:SSF52096:No Description.
  
  
 0.641
AHY46941.1
Metallo-beta-lactamase superfamily; COG:COG0491: Zn-dependent hydrolases including glyoxylases [General function prediction only]; Pfam:PF00753:Beta-lactamase-like; SMART:SM00849:Beta-lactamase-like; SUPERFAMILY:SSF56281:No Description.
 
     0.632
AHY46945.1
Tautomerase enzyme; COG:COG1942: Uncharacterized protein 4-oxalocrotonate tautomerase homolog [General function prediction only]; Pfam:PF01361:4-oxalocrotonate tautomerase; SUPERFAMILY:SSF55331:Tautomerase/MIF superfamily.
       0.605
AHY46946.1
COG:COG1012: NAD-dependent aldehyde dehydrogenases [Energy production and conversion]; Pfam:PF00171:Aldehyde dehydrogenase domain; Pfam:PF00171:Aldehyde dehydrogenase domain; ProSitePatterns:PS00070:Aldehyde dehydrogenase, conserved site; SUPERFAMILY:SSF53720:Aldehyde/histidinol dehydrogenase.
     
 0.587
AHY46942.1
COG:COG1960: Acyl-CoA dehydrogenases [Lipid metabolism]; Pfam:PF00441:Acyl-CoA oxidase/dehydrogenase, type 1; Pfam:PF00441:Acyl-CoA oxidase/dehydrogenase, type 1; ProSitePatterns:PS00072:Acyl-CoA dehydrogenase, conserved site; SUPERFAMILY:SSF56645:Acyl-CoA dehydrogenase/oxidase.
     
 0.585
AHY46949.1
Phenylacetic acid catabolic protein; COG:COG3396: Uncharacterized conserved protein [Function unknown]; Pfam:PF05138:Phenylacetic acid catabolic; SUPERFAMILY:SSF47240:Ferritin-like superfamily.
 
   
 0.460
AHY46947.1
COG:COG0663: Carbonic anhydrases/acetyltransferases isoleucine patch superfamily [General function prediction only]; Pfam:PF00132:Bacterial transferase hexapeptide repeat; Pfam:PF00132:Bacterial transferase hexapeptide repeat; SUPERFAMILY:SSF51161:Trimeric LpxA-like.
   
   0.431
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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