STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46950.1Pfam:PF06243:Phenylacetic acid degradation B;UniPathway: UPA00930. (68 aa)    
Predicted Functional Partners:
AHY46948.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.773
AHY46949.1
Phenylacetic acid catabolic protein; COG:COG3396: Uncharacterized conserved protein [Function unknown]; Pfam:PF05138:Phenylacetic acid catabolic; SUPERFAMILY:SSF47240:Ferritin-like superfamily.
       0.773
AHY46947.1
COG:COG0663: Carbonic anhydrases/acetyltransferases isoleucine patch superfamily [General function prediction only]; Pfam:PF00132:Bacterial transferase hexapeptide repeat; Pfam:PF00132:Bacterial transferase hexapeptide repeat; SUPERFAMILY:SSF51161:Trimeric LpxA-like.
       0.645
AHY46951.1
Pfam:PF06243:Phenylacetic acid degradation B;UniPathway: UPA00930.
       0.561
AHY46952.1
COG:COG2151: Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]; Pfam:PF01883:Domain of unknown function DUF59; Pfam:PF01883:Domain of unknown function DUF59; SUPERFAMILY:SSF117916:No Description.
       0.553
AHY46953.1
Hypothetical protein; COG:COG3396: Uncharacterized conserved protein [Function unknown]; Pfam:PF05138:Phenylacetic acid catabolic; Pfam:PF05138:Phenylacetic acid catabolic; SUPERFAMILY:SSF47240:Ferritin-like superfamily.
       0.553
AHY46946.1
COG:COG1012: NAD-dependent aldehyde dehydrogenases [Energy production and conversion]; Pfam:PF00171:Aldehyde dehydrogenase domain; Pfam:PF00171:Aldehyde dehydrogenase domain; ProSitePatterns:PS00070:Aldehyde dehydrogenase, conserved site; SUPERFAMILY:SSF53720:Aldehyde/histidinol dehydrogenase.
       0.420
AHY46945.1
Tautomerase enzyme; COG:COG1942: Uncharacterized protein 4-oxalocrotonate tautomerase homolog [General function prediction only]; Pfam:PF01361:4-oxalocrotonate tautomerase; SUPERFAMILY:SSF55331:Tautomerase/MIF superfamily.
       0.406
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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