STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46952.1COG:COG2151: Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]; Pfam:PF01883:Domain of unknown function DUF59; Pfam:PF01883:Domain of unknown function DUF59; SUPERFAMILY:SSF117916:No Description. (111 aa)    
Predicted Functional Partners:
AHY46953.1
Hypothetical protein; COG:COG3396: Uncharacterized conserved protein [Function unknown]; Pfam:PF05138:Phenylacetic acid catabolic; Pfam:PF05138:Phenylacetic acid catabolic; SUPERFAMILY:SSF47240:Ferritin-like superfamily.
 
  
 0.942
AHY46949.1
Phenylacetic acid catabolic protein; COG:COG3396: Uncharacterized conserved protein [Function unknown]; Pfam:PF05138:Phenylacetic acid catabolic; SUPERFAMILY:SSF47240:Ferritin-like superfamily.
 
  
 0.873
AHY46951.1
Pfam:PF06243:Phenylacetic acid degradation B;UniPathway: UPA00930.
       0.773
AHY46948.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.553
AHY46950.1
Pfam:PF06243:Phenylacetic acid degradation B;UniPathway: UPA00930.
       0.553
AHY46954.1
Na+/H+ antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.
       0.529
AHY46169.1
COG:COG0822: NifU homolog involved in Fe-S cluster formation [Energy production and conversion]; Pfam:PF01592:NIF system FeS cluster assembly, NifU, N-terminal; Pfam:PF01592:NIF system FeS cluster assembly, NifU, N-terminal; SUPERFAMILY:SSF82649:No Description.
 
    0.506
AHY48010.1
TIGRFAM:TIGR01994:SUF system FeS cluster assembly, SufU scaffold; COG:COG0822: NifU homolog involved in Fe-S cluster formation [Energy production and conversion]; Pfam:PF01592:NIF system FeS cluster assembly, NifU, N-terminal; SUPERFAMILY:SSF82649:No Description; SUF_scaf_2.
 
    0.501
AHY46947.1
COG:COG0663: Carbonic anhydrases/acetyltransferases isoleucine patch superfamily [General function prediction only]; Pfam:PF00132:Bacterial transferase hexapeptide repeat; Pfam:PF00132:Bacterial transferase hexapeptide repeat; SUPERFAMILY:SSF51161:Trimeric LpxA-like.
     
 0.495
mnmA
trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
  
    0.436
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.