STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46955.1COG:COG2159: Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]; Pfam:PF04909:Amidohydrolase 2; Pfam:PF04909:Amidohydrolase 2; SUPERFAMILY:SSF51556:No Description. (286 aa)    
Predicted Functional Partners:
AHY46956.1
TIGRFAM:TIGR02262:Benzoate-CoA ligase family; COG:COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]; Pfam:PF00501:AMP-dependent synthetase/ligase; SUPERFAMILY:SSF56801:No Description; benz_CoA_lig.
 
    0.545
AHY46995.1
COG:COG1545: Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]; Pfam:PF01796:Domain of unknown function DUF35, OB-fold, C-terminal; Pfam:PF01796:Domain of unknown function DUF35, OB-fold, C-terminal; SUPERFAMILY:SSF50249:Nucleic acid-binding, OB-fold.
 
     0.426
AHY46957.1
TIGRFAM:TIGR01891:Amidohydrolase; COG:COG1473: Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]; Pfam:PF07687:Peptidase M20, dimerisation domain; PIRSF:PIRSF037227:Aminobenzoyl-glutamate utilization protein B; SUPERFAMILY:SSF53187:No Description.
       0.425
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.