STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46964.1Histidine phosphatase superfamily (branch 1); COG:COG2062: Phosphohistidine phosphatase SixA [Signal transduction mechanisms]; Pfam:PF00300:Histidine phosphatase superfamily, clade-1; SUPERFAMILY:SSF53254:No Description;MetaCyc: PWY-2221. (253 aa)    
Predicted Functional Partners:
AHY46104.1
precorrin-3B C17-methyltransferase; TIGRFAM:TIGR01466:Cobalamin (vitamin B12) biosynthesis CobJ/CibH, precorrin-3B C17-methyltransferase, core; COG:COG1010: Precorrin-3B methylase [Coenzyme metabolism]; Pfam:PF00590:Tetrapyrrole methylase; SUPERFAMILY:SSF159672:No Description; cobJ_cbiH.
  
  
 0.535
AHY46963.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.459
cobQ
cobQ: cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
  
  
 0.456
AHY46965.1
TIGRFAM:TIGR01394:GTP-binding protein TypA; COG:COG1217: Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]; Pfam:PF00009:Elongation factor, GTP-binding domain; PRINTS:PR00315:Elongation factor, GTP-binding domain; ProSitePatterns:PS00301:Elongation factor, GTP-binding domain; SMART:SM00838:Translation elongation factor EFG, V domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase; TypA_BipA.
       0.445
AHY46266.1
Protein of unknown function (DUF4040); COG:COG1563: Predicted subunit of the Multisubunit Na+/H+ antiporter [Inorganic ion transport and metabolism]; Pfam:PF13244:Domain of unknown function DUF4040.
  
     0.437
AHY46268.1
COG:COG2212: Multisubunit Na+/H+ antiporter MnhF subunit [Inorganic ion transport and metabolism]; Pfam:PF04066:Multiple resistance and pH regulation protein F; Pfam:PF04066:Multiple resistance and pH regulation protein F.
  
     0.408
cobT
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).
  
  
 0.402
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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