STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46971.1Hypothetical Protein; Ab initio prediction:Prodigal:2.60. (546 aa)    
Predicted Functional Partners:
AHY47028.1
UbiA prenyltransferase family; COG:COG0382: 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]; Pfam:PF01040:UbiA prenyltransferase family; Belongs to the UbiA prenyltransferase family.
 
  
 0.913
AHY47027.1
TIGRFAM:TIGR00374:Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD; COG:COG0392: Predicted integral membrane protein [Function unknown]; Pfam:PF03706:Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD.
 
  
 0.699
AHY46500.1
PAP2 superfamily; Pfam:PF01569:Phosphatidic acid phosphatase type 2/haloperoxidase; SMART:SM00014:Phosphatidic acid phosphatase type 2/haloperoxidase; SUPERFAMILY:SSF48317:Phosphatidic acid phosphatase type 2/haloperoxidase.
  
  
 0.653
AHY46040.1
Dolichyl-phosphate-mannose-protein mannosyltransferase; COG:COG1807: 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis outer membrane]; Pfam:PF13231:Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
   
 0.634
AHY47570.1
Pfam:PF09594:Protein of unknown function DUF2029;UniPathway: UPA00949.
 
  
 0.579
AHY47289.1
UbiA prenyltransferase family; COG:COG0382: 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]; Pfam:PF01040:UbiA prenyltransferase family.
  
  
 0.527
AHY47967.1
COG:COG0451: Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis outer membrane / Carbohydrate transport and metabolism]; Pfam:PF01370:NAD-dependent epimerase/dehydratase; Pfam:PF01370:NAD-dependent epimerase/dehydratase; SUPERFAMILY:SSF51735:No Description.
 
  
 0.466
AHY45473.1
Cyclic nucleotide-binding domain; COG:COG0664: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; Pfam:PF00027:Cyclic nucleotide-binding domain; ProSiteProfiles:PS50042:Cyclic nucleotide-binding domain; SMART:SM00100:Cyclic nucleotide-binding domain; SUPERFAMILY:SSF51206:Cyclic nucleotide-binding-like.
  
     0.463
AHY46622.1
Sulfotransferase family; COG:COG3551: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF13469:Sulfotransferase family; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
  
  
 0.453
AHY45472.1
Cyclic nucleotide-binding domain; COG:COG0664: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; Pfam:PF00027:Cyclic nucleotide-binding domain; ProSiteProfiles:PS50042:Cyclic nucleotide-binding domain; SMART:SM00100:Cyclic nucleotide-binding domain; SUPERFAMILY:SSF51206:Cyclic nucleotide-binding-like.
 
     0.447
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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