STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46983.1Oxidoreductase, SDR family; TIGRFAM:TIGR03971:Carveol dehydrogenase; COG:COG1028: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis transport and catabolism / General function prediction only]; Pfam:PF00106:Short-chain dehydrogenase/reductase SDR; PRINTS:PR00081:Glucose/ribitol dehydrogenase; ProSitePatterns:PS00061:Short-chain dehydrogenase/reductase, conserved site; SUPERFAMILY:SSF51735:No Description; SDR_subfam_1. (277 aa)    
Predicted Functional Partners:
AHY46981.1
AAA domain (dynein-related subfamily); COG:COG0714: MoxR-like ATPases [General function prediction only]; Pfam:PF07728:ATPase, dynein-related, AAA domain; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
 
   
 0.848
AHY46982.1
COG:COG0714: MoxR-like ATPases [General function prediction only]; Pfam:PF07728:ATPase, dynein-related, AAA domain; Pfam:PF07728:ATPase, dynein-related, AAA domain; PIRSF:PIRSF002849:ATPase chaperone, AAA-type, MoxR, predicted; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
 
     0.825
AHY46984.1
Oxidoreductase, SDR family; TIGRFAM:TIGR03971:Carveol dehydrogenase; COG:COG1028: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis transport and catabolism / General function prediction only]; Pfam:PF00106:Short-chain dehydrogenase/reductase SDR; PRINTS:PR00081:Glucose/ribitol dehydrogenase; ProSitePatterns:PS00061:Short-chain dehydrogenase/reductase, conserved site; SUPERFAMILY:SSF51735:No Description; SDR_subfam_1.
 
    
0.777
AHY47919.1
TIGRFAM:TIGR03962:Mycofactocin, radical SAM peptide maturase; COG:COG0535: Predicted Fe-S oxidoreductases [General function prediction only]; Pfam:PF04055:Radical SAM; PIRSF:PIRSF037420:Radical SAM coenzyme PQQ biosynthesis protein E/heme D1 biosynthesis NirJ; SUPERFAMILY:SSF102114:No Description; mycofact_rSAM.
  
   
 0.734
AHY46985.1
Tetracyclin repressor, C-terminal all-alpha domain; COG:COG1309: Transcriptional regulator [Transcription]; Pfam:PF02909:Tetracycline transcriptional regulator, TetR, C-terminal; PRINTS:PR00400:Tetracycline transcriptional regulator, TetR; ProSiteProfiles:PS50977:DNA-binding HTH domain, TetR-type; SUPERFAMILY:SSF48498:Tetracycline transcriptional regulator, TetR-related, C-terminal.
       0.523
AHY47920.1
TIGRFAM:TIGR03966:Heme/flavin dehydrogenase, Rv0694; COG:COG1304: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases [Energy production and conversion]; Pfam:PF01070:FMN-dependent dehydrogenase; PIRSF:PIRSF000138:Alpha-hydroxy acid dehydrogenase, FMN-dependent; ProSiteProfiles:PS51349:Alpha-hydroxy acid dehydrogenase, FMN-dependent; SUPERFAMILY:SSF51395:No Description; actino_HemFlav.
 
 0.518
AHY47922.1
TIGRFAM:TIGR03965:Putative mycofactocin biosynthesis glycosyltransferase; COG:COG1215: Glycosyltransferases probably involved in cell wall biogenesis [Cell envelope biogenesis outer membrane]; Pfam:PF00535:Glycosyl transferase, family 2; SUPERFAMILY:SSF53448:No Description; mycofact_glyco.
  
 
 
 0.456
AHY46924.1
COG:COG4578: Glucitol operon activator [Transcription]; Pfam:PF06923:Glucitol operon activator.
  
    0.426
AHY46925.1
EII-GUT: PTS system, glucitol/sorbitol-specific, IIC component; TIGRFAM:TIGR00821:Phosphotransferase system, enzyme II sorbitol-specific factor; COG:COG3730: Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism]; Pfam:PF03608:Phosphotransferase system, enzyme II sorbitol-specific factor; PIRSF:PIRSF038321:Phosphotransferase system, enzyme II sorbitol-specific factor; ProSiteProfiles:PS51107:Phosphotransferase system, enzyme II sorbitol-specific factor.
  
    0.423
AHY45525.1
COG:COG0331: (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]; Pfam:PF00698:Acyl transferase; Pfam:PF00698:Acyl transferase; SMART:SM00827:Polyketide synthase, acyl transferase domain; SUPERFAMILY:SSF52151:Acyl transferase/acyl hydrolase/lysophospholipase.
 
 
 0.403
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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