STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46996.1TIGRFAM:TIGR02428:3-oxoacid CoA-transferase, subunit B; COG:COG2057: Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit [Lipid metabolism]; Pfam:PF01144:Coenzyme A transferase family I; SMART:SM00882:Coenzyme A transferase family I; SUPERFAMILY:SSF100950:No Description; pcaJ_scoB_fam. (221 aa)    
Predicted Functional Partners:
AHY46997.1
TIGRFAM:TIGR02429:3-oxoacid CoA-transferase, subunit A; COG:COG1788: Acyl CoA:acetate/3-ketoacid CoA transferase alpha subunit [Lipid metabolism]; Pfam:PF01144:Coenzyme A transferase family I; SMART:SM00882:Coenzyme A transferase family I; SUPERFAMILY:SSF100950:No Description; pcaI_scoA_fam.
 
 0.999
AHY46350.1
COG:COG1788: Acyl CoA:acetate/3-ketoacid CoA transferase alpha subunit [Lipid metabolism]; Pfam:PF01144:Coenzyme A transferase family I; Pfam:PF01144:Coenzyme A transferase family I; SMART:SM00882:Coenzyme A transferase family I; SUPERFAMILY:SSF100950:No Description.
  
 
 0.851
AHY46994.1
COG:COG0183: Acetyl-CoA acetyltransferase [Lipid metabolism]; PIRSF:PIRSF000429:Thiolase; SUPERFAMILY:SSF53901:Thiolase-like.
  
  
 0.790
AHY46995.1
COG:COG1545: Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]; Pfam:PF01796:Domain of unknown function DUF35, OB-fold, C-terminal; Pfam:PF01796:Domain of unknown function DUF35, OB-fold, C-terminal; SUPERFAMILY:SSF50249:Nucleic acid-binding, OB-fold.
       0.744
AHY46993.1
COG:COG2055: Malate/L-lactate dehydrogenases [Energy production and conversion]; Pfam:PF02615:Malate/L-lactate dehydrogenase; Pfam:PF02615:Malate/L-lactate dehydrogenase; SUPERFAMILY:SSF89733:Malate/L-lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
  
    0.731
AHY46992.1
Dioxygenase; COG:COG3485: Protocatechuate 34-dioxygenase beta subunit [Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF00775:Intradiol ring-cleavage dioxygenase, C-terminal; ProSitePatterns:PS00083:Intradiol ring-cleavage dioxygenase, C-terminal; SUPERFAMILY:SSF49482:Intradiol ring-cleavage dioxygenase, core.
 
  
 0.558
AHY47122.1
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; COG:COG1250: 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]; Pfam:PF02737:3-hydroxyacyl-CoA dehydrogenase, NAD binding; SUPERFAMILY:SSF51735:No Description;MetaCyc: PWY-1361; MetaCyc: PWY-5109; MetaCyc: PWY-5136; MetaCyc: PWY-5138; MetaCyc: PWY-5789; MetaCyc: PWY-6435; MetaCyc: PWY-735; UniPathway: UPA00659.
  
 
 0.552
AHY46998.1
COG:COG0583: Transcriptional regulator [Transcription]; Pfam:PF03466:LysR, substrate-binding; Pfam:PF03466:LysR, substrate-binding; PRINTS:PR00039:Transcription regulator HTH, LysR; ProSiteProfiles:PS50931:Transcription regulator HTH, LysR; SUPERFAMILY:SSF53850:No Description; Belongs to the LysR transcriptional regulatory family.
     
 0.522
AHY46289.1
COG:COG1454: Alcohol dehydrogenase class IV [Energy production and conversion]; Pfam:PF00465:Alcohol dehydrogenase, iron-type; Pfam:PF00465:Alcohol dehydrogenase, iron-type; SUPERFAMILY:SSF56796:No Description.
 
  
 0.514
AHY46347.1
TIGRFAM:TIGR02425:4-carboxymuconolactone decarboxylase; COG:COG0599: Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]; Pfam:PF02627:Carboxymuconolactone decarboxylase; SUPERFAMILY:SSF69118:No Description;KEGG: 00362; UniPathway: UPA00157; decarb_PcaC.
  
  
 0.440
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.