STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46998.1COG:COG0583: Transcriptional regulator [Transcription]; Pfam:PF03466:LysR, substrate-binding; Pfam:PF03466:LysR, substrate-binding; PRINTS:PR00039:Transcription regulator HTH, LysR; ProSiteProfiles:PS50931:Transcription regulator HTH, LysR; SUPERFAMILY:SSF53850:No Description; Belongs to the LysR transcriptional regulatory family. (312 aa)    
Predicted Functional Partners:
AHY46999.1
COG:COG0726: Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]; Pfam:PF01522:Polysaccharide deacetylase; SUPERFAMILY:SSF88713:Glycoside hydrolase/deacetylase, beta/alpha-barrel.
   
   0.616
AHY46993.1
COG:COG2055: Malate/L-lactate dehydrogenases [Energy production and conversion]; Pfam:PF02615:Malate/L-lactate dehydrogenase; Pfam:PF02615:Malate/L-lactate dehydrogenase; SUPERFAMILY:SSF89733:Malate/L-lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
 
   
 0.551
AHY46997.1
TIGRFAM:TIGR02429:3-oxoacid CoA-transferase, subunit A; COG:COG1788: Acyl CoA:acetate/3-ketoacid CoA transferase alpha subunit [Lipid metabolism]; Pfam:PF01144:Coenzyme A transferase family I; SMART:SM00882:Coenzyme A transferase family I; SUPERFAMILY:SSF100950:No Description; pcaI_scoA_fam.
     
 0.525
AHY46996.1
TIGRFAM:TIGR02428:3-oxoacid CoA-transferase, subunit B; COG:COG2057: Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit [Lipid metabolism]; Pfam:PF01144:Coenzyme A transferase family I; SMART:SM00882:Coenzyme A transferase family I; SUPERFAMILY:SSF100950:No Description; pcaJ_scoB_fam.
     
 0.522
AHY47837.1
COG:COG0069: Glutamate synthase domain 2 [Amino acid transport and metabolism]; Pfam:PF01645:Glutamate synthase, central-C; ProSiteProfiles:PS51278:Glutamine amidotransferase type 2 domain; SUPERFAMILY:SSF51395:No Description;UniPathway: UPA00045.
  
  
 0.519
AHY46994.1
COG:COG0183: Acetyl-CoA acetyltransferase [Lipid metabolism]; PIRSF:PIRSF000429:Thiolase; SUPERFAMILY:SSF53901:Thiolase-like.
  
  
 0.501
AHY46995.1
COG:COG1545: Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]; Pfam:PF01796:Domain of unknown function DUF35, OB-fold, C-terminal; Pfam:PF01796:Domain of unknown function DUF35, OB-fold, C-terminal; SUPERFAMILY:SSF50249:Nucleic acid-binding, OB-fold.
       0.489
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.