STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47028.1UbiA prenyltransferase family; COG:COG0382: 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]; Pfam:PF01040:UbiA prenyltransferase family; Belongs to the UbiA prenyltransferase family. (298 aa)    
Predicted Functional Partners:
AHY46971.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
 
  
 0.913
AHY47027.1
TIGRFAM:TIGR00374:Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD; COG:COG0392: Predicted integral membrane protein [Function unknown]; Pfam:PF03706:Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD.
 
     0.877
lgt
Lgt: prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
 
    0.648
AHY46097.1
Von Willebrand factor type A domain; COG:COG1239: Mg-chelatase subunit ChlI [Coenzyme metabolism]; Pfam:PF13519:von Willebrand factor type A domain; ProSiteProfiles:PS50234:von Willebrand factor, type A; SMART:SM00327:von Willebrand factor, type A; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
  
  
 0.611
menA
menA: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.
     
 0.594
AHY47967.1
COG:COG0451: Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis outer membrane / Carbohydrate transport and metabolism]; Pfam:PF01370:NAD-dependent epimerase/dehydratase; Pfam:PF01370:NAD-dependent epimerase/dehydratase; SUPERFAMILY:SSF51735:No Description.
 
   
 0.569
AHY46518.1
Hypothetical protein; COG:COG1434: Uncharacterized conserved protein [Function unknown]; Pfam:PF02698:Domain of unknown function DUF218; Pfam:PF02698:Domain of unknown function DUF218.
  
     0.497
AHY46500.1
PAP2 superfamily; Pfam:PF01569:Phosphatidic acid phosphatase type 2/haloperoxidase; SMART:SM00014:Phosphatidic acid phosphatase type 2/haloperoxidase; SUPERFAMILY:SSF48317:Phosphatidic acid phosphatase type 2/haloperoxidase.
  
  
 0.485
gyrA
gyrA: DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
  
    0.475
mltG
TIGR00247: conserved hypothetical protein, YceG family; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
   
    0.468
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.